Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30385
         (458 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein S11|Schizosac...    76   3e-15
SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein S11|Sch...    76   3e-15
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    27   1.0  
SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|...    27   1.8  
SPAC343.13 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces...    25   4.2  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    25   4.2  
SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit Gsa1...    25   5.6  
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k...    25   7.3  
SPAC23C11.04c |pnk1||DNA kinase/phosphatase Pnk1|Schizosaccharom...    24   9.7  

>SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein
           S11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score = 75.8 bits (178), Expect = 3e-15
 Identities = 37/59 (62%), Positives = 43/59 (72%)
 Frame = +1

Query: 280 QTEKAFQKQATVFLNRKGGMKRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPFTGNVSI 456
           Q+E+AFQKQ  +F N K G  R   R +K+VGLGFKTP EAI G Y+DKKCPF G VSI
Sbjct: 8   QSERAFQKQPHIFQNAKKGAGR---RWYKDVGLGFKTPAEAIYGEYVDKKCPFVGQVSI 63


>SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein
           S11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score = 75.8 bits (178), Expect = 3e-15
 Identities = 37/59 (62%), Positives = 43/59 (72%)
 Frame = +1

Query: 280 QTEKAFQKQATVFLNRKGGMKRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPFTGNVSI 456
           Q+E+AFQKQ  +F N K G  R   R +K+VGLGFKTP EAI G Y+DKKCPF G VSI
Sbjct: 8   QSERAFQKQPHIFQNAKKGAGR---RWYKDVGLGFKTPAEAIYGEYVDKKCPFVGQVSI 63


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1692

 Score = 27.5 bits (58), Expect = 1.0
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
 Frame = -2

Query: 268  NSAREKSEPIG---RVGFILLEPTLENVFNLDIHRGCSGDPDQKCCCTI 131
            N+A   SE I    R GF+ L   L NV + D+ +   GD D     T+
Sbjct: 1059 NAADSSSEQICNALRRGFLRLNKKLGNVIHYDLRKSSEGDVDSNYVTTM 1107


>SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = -1

Query: 236 TCRFYIIGT-YIGKCF*FGHSSWLFWRSRPKVLLHNHAGHRTDLTAIAYPCM 84
           TC+F  + + ++ KC     SS L      + L   H GH  ++T I   C+
Sbjct: 273 TCKFSKLNSLFLSKCIGLTDSSLLSLTKLSQSLTTLHLGHCYEITDIGVQCL 324


>SPAC343.13 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 526

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -2

Query: 256 EKSEPIGRVGFILLEPTLENV 194
           +K  PIGR GFI L   L+NV
Sbjct: 97  QKEIPIGRNGFIPLSAGLDNV 117


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 259 VPNSAPDQTEKAFQKQATVFLNRKGGMKRKDMRH 360
           VPN   D  E+A  +Q    +N KG +  + +RH
Sbjct: 517 VPNEEGDYAERAVPEQIKHKVNEKGELVSEIVRH 550


>SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit
           Gsa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 498

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -2

Query: 412 YPQSPLWEF*SLNQHSYGDACPSSSCHLSCSGK 314
           YP    W+     +++    CPS S HL+ S K
Sbjct: 299 YPSQEAWDMRLTIENTLAIKCPSISTHLAGSKK 331


>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
           kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 836

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = +3

Query: 180 MSKLKTFSNVGSNNIKPTRPIGSDFSRAEFGTRSDRESVSETG-HRFPEQERWHEEEGHA 356
           +SK KT +   + N     P G+++   +  T S     SET  + +P+Q ++HE    A
Sbjct: 180 LSKTKTLAYEETINQLDETPGGTNYPMNKKKTLS-----SETNKYEYPQQSKFHECSQFA 234

Query: 357 SP 362
           SP
Sbjct: 235 SP 236


>SPAC23C11.04c |pnk1||DNA kinase/phosphatase
           Pnk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +1

Query: 325 RKGGMKRKDMRHHKNVGLGFKTPREAIEG 411
           R G     D++  +N+G+ F+TP +   G
Sbjct: 194 RPGDHNSTDLKFAENIGIKFETPEQFFLG 222


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,183,751
Number of Sequences: 5004
Number of extensions: 48652
Number of successful extensions: 98
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)