Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30385
(458 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0920 - 22603868-22603964,22604110-22604222,22604281-226044... 83 1e-16
07_03_0919 - 22594980-22595111,22595398-22595427,22595522-225955... 83 1e-16
04_04_1135 + 31140032-31140043,31140552-31140592,31140680-311407... 83 1e-16
04_04_1134 + 31137326-31137337,31137964-31138004,31138089-311381... 83 1e-16
04_04_0417 - 25052305-25052398,25052583-25052672,25052740-250529... 81 4e-16
08_01_0706 - 6235817-6235988,6236028-6236338,6236421-6236627,623... 69 1e-12
08_02_1442 + 27120604-27120890,27121029-27121166,27121280-271213... 29 1.4
01_07_0290 - 42542201-42542359,42542443-42542551,42542729-425435... 29 1.8
11_06_0315 + 22318155-22318210,22319743-22319769,22319868-223199... 29 2.4
07_01_0240 - 1749674-1750514,1751157-1752040 29 2.4
11_04_0054 - 12895574-12895840,12906985-12908121,12908274-12908591 28 3.1
04_04_1216 + 31811403-31812267,31813187-31813877,31813981-318141... 28 3.1
03_05_0842 + 28110940-28111141,28111451-28111879,28112034-281128... 28 3.1
02_02_0101 - 6788090-6788356,6788770-6788940 28 3.1
10_06_0155 + 11306808-11306956,11307157-11307418,11307496-113076... 27 5.5
01_01_0593 + 4416283-4417403,4417516-4417927 27 5.5
>07_03_0920 -
22603868-22603964,22604110-22604222,22604281-22604429,
22604732-22604832,22604917-22604957,22605584-22605595
Length = 170
Score = 82.6 bits (195), Expect = 1e-16
Identities = 43/65 (66%), Positives = 49/65 (75%), Gaps = 5/65 (7%)
Frame = +1
Query: 277 DQTEKAFQKQATVFLN-RKGGMKRKD----MRHHKNVGLGFKTPREAIEGTYIDKKCPFT 441
+QTEKAF KQ VFL+ +K G +K R K++GLGFKTPREAIEGTYIDKKCPFT
Sbjct: 3 EQTEKAFLKQPKVFLSSKKSGKGKKPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCPFT 62
Query: 442 GNVSI 456
G VSI
Sbjct: 63 GTVSI 67
>07_03_0919 -
22594980-22595111,22595398-22595427,22595522-22595587,
22596021-22596107,22596868-22596921,22597696-22597762,
22598099-22598215,22598536-22598637,22598784-22598902,
22598966-22599049,22599220-22599354,22599470-22599505,
22599581-22599700,22600557-22600645,22601507-22601596,
22601629-22601802,22602135-22602235,22602323-22602363,
22602872-22602883
Length = 551
Score = 82.6 bits (195), Expect = 1e-16
Identities = 43/65 (66%), Positives = 49/65 (75%), Gaps = 5/65 (7%)
Frame = +1
Query: 277 DQTEKAFQKQATVFLN-RKGGMKRKD----MRHHKNVGLGFKTPREAIEGTYIDKKCPFT 441
+QTEKAF KQ VFL+ +K G +K R K++GLGFKTPREAIEGTYIDKKCPFT
Sbjct: 3 EQTEKAFLKQPKVFLSSKKSGKGKKPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCPFT 62
Query: 442 GNVSI 456
G VSI
Sbjct: 63 GTVSI 67
>04_04_1135 +
31140032-31140043,31140552-31140592,31140680-31140780,
31141113-31141419,31141565-31141661
Length = 185
Score = 82.6 bits (195), Expect = 1e-16
Identities = 43/65 (66%), Positives = 49/65 (75%), Gaps = 5/65 (7%)
Frame = +1
Query: 277 DQTEKAFQKQATVFLN-RKGGMKRKD----MRHHKNVGLGFKTPREAIEGTYIDKKCPFT 441
+QTEKAF KQ VFL+ +K G +K R K++GLGFKTPREAIEGTYIDKKCPFT
Sbjct: 3 EQTEKAFLKQPKVFLSSKKSGKGKKPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCPFT 62
Query: 442 GNVSI 456
G VSI
Sbjct: 63 GTVSI 67
>04_04_1134 +
31137326-31137337,31137964-31138004,31138089-31138189,
31138489-31138637,31138696-31138808,31138954-31139050
Length = 170
Score = 82.6 bits (195), Expect = 1e-16
Identities = 43/65 (66%), Positives = 49/65 (75%), Gaps = 5/65 (7%)
Frame = +1
Query: 277 DQTEKAFQKQATVFLN-RKGGMKRKD----MRHHKNVGLGFKTPREAIEGTYIDKKCPFT 441
+QTEKAF KQ VFL+ +K G +K R K++GLGFKTPREAIEGTYIDKKCPFT
Sbjct: 3 EQTEKAFLKQPKVFLSSKKSGKGKKPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCPFT 62
Query: 442 GNVSI 456
G VSI
Sbjct: 63 GTVSI 67
>04_04_0417 -
25052305-25052398,25052583-25052672,25052740-25052905,
25053547-25053647,25053735-25053775,25054170-25054181
Length = 167
Score = 81.0 bits (191), Expect = 4e-16
Identities = 43/65 (66%), Positives = 46/65 (70%), Gaps = 5/65 (7%)
Frame = +1
Query: 277 DQTEKAFQKQATVFLNRKGGMKRKDM-----RHHKNVGLGFKTPREAIEGTYIDKKCPFT 441
+QTE+AF KQ VFL K K K R KN+GLGFKTPREAIEGTYIDKKCPFT
Sbjct: 3 EQTERAFLKQPKVFLCPKKTTKGKKPGKGGNRFWKNIGLGFKTPREAIEGTYIDKKCPFT 62
Query: 442 GNVSI 456
G VSI
Sbjct: 63 GTVSI 67
>08_01_0706 -
6235817-6235988,6236028-6236338,6236421-6236627,
6236718-6236889,6236994-6237249,6238015-6238073,
6238693-6238782,6238869-6239013,6239598-6239712,
6240690-6240701
Length = 512
Score = 69.3 bits (162), Expect = 1e-12
Identities = 35/56 (62%), Positives = 39/56 (69%), Gaps = 4/56 (7%)
Frame = +1
Query: 301 KQATVFLNRKGGMKRKD----MRHHKNVGLGFKTPREAIEGTYIDKKCPFTGNVSI 456
+Q F +K G +K R KN+GLGFKTPREAIEGTYIDKKCPFTG VSI
Sbjct: 3 EQVLDFSPKKSGKGKKPGKGGNRFWKNIGLGFKTPREAIEGTYIDKKCPFTGTVSI 58
>08_02_1442 +
27120604-27120890,27121029-27121166,27121280-27121382,
27121877-27122036,27122927-27123114,27123203-27124770,
27124882-27125869,27126595-27127098,27127347-27127433,
27127753-27127821,27128012-27128041
Length = 1373
Score = 29.5 bits (63), Expect = 1.4
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = -3
Query: 423 VNVGTLNRLSGSFEA*TNILMVTHVLPLHATFPVQENGGLFLKR 292
++ G L ++SGSF+ T++ + LPL+ V E FL+R
Sbjct: 772 ISEGELKQISGSFKGTTSLRTLLMELPLYRGLEVLELRSFFLER 815
>01_07_0290 - 42542201-42542359,42542443-42542551,42542729-42543516,
42543601-42543744,42543840-42544013,42544056-42544369,
42544467-42544636,42544916-42545043,42545125-42545185,
42545473-42545642,42545783-42547387,42547479-42547631,
42547747-42547905,42548066-42548236,42548357-42548404,
42548509-42548624,42548885-42549029,42549122-42549220
Length = 1570
Score = 29.1 bits (62), Expect = 1.8
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = +3
Query: 246 SDFSRAEFGTRSD--RESVSETGHRFPEQERWHEEEGHASP 362
+D +AEF S+ R + TG + P + WHE +SP
Sbjct: 1278 TDKPKAEFLMESEGRRAGMHSTGQKHPRKPNWHEGNTKSSP 1318
>11_06_0315 +
22318155-22318210,22319743-22319769,22319868-22319990,
22320867-22321110,22321487-22321981
Length = 314
Score = 28.7 bits (61), Expect = 2.4
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +2
Query: 2 PHWESLKNFSSCWVLL*LFNMARSAWHSY 88
P W S+K CW++L FN A + +Y
Sbjct: 71 PFWPSMKLIFICWLVLPYFNGAAFVYQNY 99
>07_01_0240 - 1749674-1750514,1751157-1752040
Length = 574
Score = 28.7 bits (61), Expect = 2.4
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -3
Query: 216 WNLHWKMFLIWTFIVAVLAIQTKSVVAQSCR 124
W LH L WT +V + AI T ++VA R
Sbjct: 66 WLLHTFCILQWTVLVQIAAINTITLVATDAR 96
>11_04_0054 - 12895574-12895840,12906985-12908121,12908274-12908591
Length = 573
Score = 28.3 bits (60), Expect = 3.1
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -3
Query: 360 VTHVLPLHATFPVQENGGLFLKRFLCL 280
V H +P+H T+ ++ L+L R +CL
Sbjct: 293 VAHFIPVHTTYSGKKLAELYLARIMCL 319
>04_04_1216 +
31811403-31812267,31813187-31813877,31813981-31814131,
31814289-31814351,31814590-31814664,31814934-31815032
Length = 647
Score = 28.3 bits (60), Expect = 3.1
Identities = 30/107 (28%), Positives = 42/107 (39%), Gaps = 2/107 (1%)
Frame = +3
Query: 12 SPLRTSHLAGFSSDYLIWPGVPGIHTRIRNCR*VRSVSGMIVQQHFWSGSPEQPR*MSKL 191
SP+R HL SD +PG+ +NC+ S + QH L
Sbjct: 359 SPMRKIHLLDSDSDSDDNKEMPGLQ---QNCK-----SKVSTVQHKGKAEMNDSWATPAL 410
Query: 192 KTFSNVGSNNIKPTRPIGSDFSRAEFGTRSDRE--SVSETGHRFPEQ 326
F N +++ +RP + G + R SVSETG FP Q
Sbjct: 411 DEFCNEYFKSVEDSRPSQQKEGNSFCGPKVIRSNYSVSETGGHFPHQ 457
>03_05_0842 +
28110940-28111141,28111451-28111879,28112034-28112806,
28114046-28114237,28115116-28115277,28115395-28115861,
28116339-28116384,28116639-28116647
Length = 759
Score = 28.3 bits (60), Expect = 3.1
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 6/46 (13%)
Frame = +3
Query: 240 IGSDFSRAEFGTRSDRESVSETGHRFP------EQERWHEEEGHAS 359
+G DF + F SD + S+TG FP +Q + H+E G AS
Sbjct: 190 VGEDFKKDLFYLTSDPQLTSQTGDNFPVAQVADDQGKNHKEIGIAS 235
>02_02_0101 - 6788090-6788356,6788770-6788940
Length = 145
Score = 28.3 bits (60), Expect = 3.1
Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Frame = -1
Query: 197 CF*FGHSSWLFWR--SRPKVLLHNHAGH 120
CF H+S++ WR SRPK++ + GH
Sbjct: 75 CFPVAHTSFMSWRDESRPKIVNNLRRGH 102
>10_06_0155 +
11306808-11306956,11307157-11307418,11307496-11307697,
11308118-11308353
Length = 282
Score = 27.5 bits (58), Expect = 5.5
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -2
Query: 217 LEPTLENVFNLDIHRGCSGDPDQKCCCTI 131
LE + +F ++H C GD D CC +
Sbjct: 171 LESSTLKMFFAEVHLDCKGDEDVYVCCPL 199
>01_01_0593 + 4416283-4417403,4417516-4417927
Length = 510
Score = 27.5 bits (58), Expect = 5.5
Identities = 13/50 (26%), Positives = 27/50 (54%)
Frame = -3
Query: 150 KSVVAQSCRTPNGLNGNCVSVYECQALLAILNNQRRTQQDEKFLRDSQCG 1
+ + + + +GL G+ +S+Y + ++ Q+DE+FLRD+ G
Sbjct: 260 EEIAKRKAQASDGLQGDILSMY----MKWSIHESAHKQKDERFLRDTAVG 305
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,525,968
Number of Sequences: 37544
Number of extensions: 331187
Number of successful extensions: 734
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 729
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 907440304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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