Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30385
(458 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_26249| Best HMM Match : No HMM Matches (HMM E-Value=.) 84 6e-17
SB_20853| Best HMM Match : F-box (HMM E-Value=1.1e-05) 30 0.80
SB_6893| Best HMM Match : PPV_E2_C (HMM E-Value=0.94) 29 1.8
SB_39731| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_9212| Best HMM Match : RVT_1 (HMM E-Value=4.5e-36) 27 5.6
SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.6
SB_27075| Best HMM Match : rve (HMM E-Value=1.5e-16) 27 5.6
SB_13654| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.6
SB_41962| Best HMM Match : RVT_1 (HMM E-Value=1.4e-18) 27 9.9
SB_14466| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_27818| Best HMM Match : Ion_trans_2 (HMM E-Value=2.5e-33) 27 9.9
SB_23095| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
>SB_26249| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 171
Score = 83.8 bits (198), Expect = 6e-17
Identities = 46/76 (60%), Positives = 54/76 (71%), Gaps = 16/76 (21%)
Frame = +1
Query: 277 DQTEKAFQKQATVFLNRKGGM----KRKDMRHHKNVGLGFKTP------------REAIE 408
+QTE+A+QKQA +F NRK + K+KD+R +NVGLGFKTP REAIE
Sbjct: 3 EQTERAYQKQAPIFQNRKRVLGQVTKKKDLRFVRNVGLGFKTPKDVCNCTYLLPEREAIE 62
Query: 409 GTYIDKKCPFTGNVSI 456
GTYIDKKCPFTGNVSI
Sbjct: 63 GTYIDKKCPFTGNVSI 78
>SB_20853| Best HMM Match : F-box (HMM E-Value=1.1e-05)
Length = 637
Score = 30.3 bits (65), Expect = 0.80
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = -3
Query: 372 NILMVTHVLPLHATFPVQENGGLFLKRFLCLIWCRIRHEKSPNLSDV 232
+++ VLPLH T L L R +CL +RH S N +DV
Sbjct: 415 DVIQSYQVLPLHGTRVEPIPSCLALYRLICLFDLNVRHYVSVNEADV 461
>SB_6893| Best HMM Match : PPV_E2_C (HMM E-Value=0.94)
Length = 1058
Score = 29.1 bits (62), Expect = 1.8
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +3
Query: 159 SPEQPR*MSKLKTFSNVGSNNIKPTRPIGSDFS 257
SP+Q ++ KT +NV S N K T+PI S+ S
Sbjct: 725 SPQQQPQGAQQKTENNVNSPNTKATKPIASEDS 757
>SB_39731| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 591
Score = 28.7 bits (61), Expect = 2.4
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -2
Query: 421 QCRYPQSPLWEF*SLNQHSYGDACP 347
+C QS LWE SL QH Y + P
Sbjct: 505 KCNALQSSLWELKSLQQHYYPEVSP 529
>SB_9212| Best HMM Match : RVT_1 (HMM E-Value=4.5e-36)
Length = 449
Score = 27.5 bits (58), Expect = 5.6
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -2
Query: 220 LLEPTLENVFNLDIHRGCSGDPDQKCCCTIMP 125
+L P+L N+ NL IH G PD+ C ++P
Sbjct: 181 ILCPSLTNLINLSIHTGLY--PDKWKCSKVLP 210
>SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4529
Score = 27.5 bits (58), Expect = 5.6
Identities = 17/60 (28%), Positives = 30/60 (50%)
Frame = +3
Query: 168 QPR*MSKLKTFSNVGSNNIKPTRPIGSDFSRAEFGTRSDRESVSETGHRFPEQERWHEEE 347
+PR SK ++ + NIKP DF +AE+ R RE + + +Q++ E++
Sbjct: 3649 KPRTPSKSRSRKTSKTENIKPVVASVMDFRKAEY-ERKKREFEEQQSKKRMQQKQLREQK 3707
>SB_27075| Best HMM Match : rve (HMM E-Value=1.5e-16)
Length = 656
Score = 27.5 bits (58), Expect = 5.6
Identities = 10/33 (30%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +3
Query: 9 GSPLRTSHLAGFSSDYLIWPGVPG-IHTRIRNC 104
G+ + S ++ DY+ WPG+ + R+R+C
Sbjct: 378 GAHMGESKSLSYARDYVFWPGMSAQVKDRVRSC 410
>SB_13654| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1451
Score = 27.5 bits (58), Expect = 5.6
Identities = 10/33 (30%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +3
Query: 9 GSPLRTSHLAGFSSDYLIWPGVPG-IHTRIRNC 104
G+ + S ++ DY+ WPG+ + R+R+C
Sbjct: 838 GAHMGESKSLSYARDYVFWPGMSAQVKDRVRSC 870
>SB_41962| Best HMM Match : RVT_1 (HMM E-Value=1.4e-18)
Length = 1052
Score = 26.6 bits (56), Expect = 9.9
Identities = 10/33 (30%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +3
Query: 9 GSPLRTSHLAGFSSDYLIWPGVPG-IHTRIRNC 104
G+ + S ++ DY+ WPG+ + R+R+C
Sbjct: 683 GAHMGESKSLPYARDYVFWPGMSAQVKDRVRSC 715
>SB_14466| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1052
Score = 26.6 bits (56), Expect = 9.9
Identities = 10/33 (30%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +3
Query: 9 GSPLRTSHLAGFSSDYLIWPGVPG-IHTRIRNC 104
G+ + S ++ DY+ WPG+ + R+R+C
Sbjct: 683 GAHMGESKSLPYARDYVFWPGMSAQVKDRVRSC 715
>SB_27818| Best HMM Match : Ion_trans_2 (HMM E-Value=2.5e-33)
Length = 352
Score = 26.6 bits (56), Expect = 9.9
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = -2
Query: 304 VSETLSLSDLVPNSAREKSEP 242
V T+ DLVPN RE S P
Sbjct: 132 VFSTIGFGDLVPNQGREPSNP 152
>SB_23095| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2722
Score = 26.6 bits (56), Expect = 9.9
Identities = 16/47 (34%), Positives = 20/47 (42%)
Frame = -3
Query: 162 AIQTKSVVAQSCRTPNGLNGNCVSVYECQALLAILNNQRRTQQDEKF 22
A Q + C LNG S EC L AIL + RT + E +
Sbjct: 2231 AFQKVEMPVMQCLVRMELNGFGFSEAECDRLKAILQAKLRTLEQEAY 2277
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,897,048
Number of Sequences: 59808
Number of extensions: 402083
Number of successful extensions: 864
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 862
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 932979724
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -