Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30385
         (458 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    23   2.1  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    23   2.1  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   4.8  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   4.8  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   4.8  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   8.5  

>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -1

Query: 188 FGHSSWLFWRSRPKVLLHNHAGHRTDL 108
           FG S+W +   R    LH  A  + DL
Sbjct: 168 FGGSAWSWREERQAYYLHQFAPEQPDL 194


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -1

Query: 188 FGHSSWLFWRSRPKVLLHNHAGHRTDL 108
           FG S+W +   R    LH  A  + DL
Sbjct: 168 FGGSAWSWREERQAYYLHQFAPEQPDL 194


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.4 bits (43), Expect = 4.8
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -2

Query: 172 GCSGDPDQK 146
           GCSG+PD K
Sbjct: 18  GCSGNPDAK 26


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 4.8
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 262 PNSAPDQTEKAFQKQATVFLN 324
           P SAP      F  Q+TVFL+
Sbjct: 317 PPSAPQNLTVNFVDQSTVFLS 337


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.4 bits (43), Expect = 4.8
 Identities = 7/16 (43%), Positives = 8/16 (50%)
 Frame = +3

Query: 312 RFPEQERWHEEEGHAS 359
           R P +  WH  E H S
Sbjct: 149 RTPTEASWHSPEAHIS 164


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 13/53 (24%), Positives = 21/53 (39%)
 Frame = +1

Query: 262 PNSAPDQTEKAFQKQATVFLNRKGGMKRKDMRHHKNVGLGFKTPREAIEGTYI 420
           PNS  + T K  +K AT         K +     KN+     T  +++  T +
Sbjct: 783 PNSTKETTPKKERKTATTTQPVISSRKEQKKSEEKNINDHCVTTEQSVVVTNV 835


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,574
Number of Sequences: 438
Number of extensions: 3376
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12189771
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)