Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30385
(458 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g30800.1 68417.m04363 40S ribosomal protein S11 (RPS11B) ribo... 83 1e-16
At3g48930.1 68416.m05345 40S ribosomal protein S11 (RPS11A) 81 5e-16
At5g23740.1 68418.m02784 40S ribosomal protein S11 (RPS11C) 79 2e-15
At4g35720.1 68417.m05069 expressed protein contains Pfam profile... 31 0.49
At4g18230.1 68417.m02708 expressed protein predicted gene M02B7.... 27 4.6
At3g22104.1 68416.m02789 phototropic-responsive NPH3 protein-rel... 27 6.1
At1g32750.1 68414.m04038 HAC13 protein (HAC13) identical to HAC1... 27 6.1
At4g14390.1 68417.m02219 ankyrin repeat family protein contains ... 27 8.1
At1g06490.1 68414.m00688 glycosyl transferase family 48 protein ... 27 8.1
>At4g30800.1 68417.m04363 40S ribosomal protein S11 (RPS11B)
ribosomal protein S11, Arabidopsis thaliana,PIR2:C35542
Length = 159
Score = 82.6 bits (195), Expect = 1e-16
Identities = 43/65 (66%), Positives = 47/65 (72%), Gaps = 5/65 (7%)
Frame = +1
Query: 277 DQTEKAFQKQATVFLNRKGGMKRK-----DMRHHKNVGLGFKTPREAIEGTYIDKKCPFT 441
+QTEKAF KQ VFL+ K K K R KN+GLGFKTPREAIEGTYID+KCPFT
Sbjct: 3 EQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIEGTYIDQKCPFT 62
Query: 442 GNVSI 456
G VSI
Sbjct: 63 GTVSI 67
>At3g48930.1 68416.m05345 40S ribosomal protein S11 (RPS11A)
Length = 160
Score = 80.6 bits (190), Expect = 5e-16
Identities = 41/65 (63%), Positives = 46/65 (70%), Gaps = 5/65 (7%)
Frame = +1
Query: 277 DQTEKAFQKQATVFLNRKGGMKRK-----DMRHHKNVGLGFKTPREAIEGTYIDKKCPFT 441
+QTEKAF KQ VFL+ K K K R KN+GLGFKTPREAI+G Y+DKKCPFT
Sbjct: 3 EQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYVDKKCPFT 62
Query: 442 GNVSI 456
G VSI
Sbjct: 63 GTVSI 67
>At5g23740.1 68418.m02784 40S ribosomal protein S11 (RPS11C)
Length = 159
Score = 78.6 bits (185), Expect = 2e-15
Identities = 42/65 (64%), Positives = 46/65 (70%), Gaps = 5/65 (7%)
Frame = +1
Query: 277 DQTEKAFQKQATVFLNRK--GGMKRKDM---RHHKNVGLGFKTPREAIEGTYIDKKCPFT 441
+QTEKAF KQ VFL+ K G KR R KN+GLGFKTPREAI+G YID KCPFT
Sbjct: 3 EQTEKAFLKQPKVFLSSKISGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYIDSKCPFT 62
Query: 442 GNVSI 456
G VSI
Sbjct: 63 GTVSI 67
>At4g35720.1 68417.m05069 expressed protein contains Pfam profile
PF03087: Arabidopsis protein of unknown function
Length = 325
Score = 30.7 bits (66), Expect = 0.49
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +1
Query: 316 FLNRKGGMKRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPFTG 444
FL+ G+K K+ HHK G+ K ++ IE + +K+ TG
Sbjct: 203 FLSSPKGLKTKNHHHHKGWGIVMKLVKKGIEHHHQEKRDYETG 245
>At4g18230.1 68417.m02708 expressed protein predicted gene M02B7.4,
Caenorhabditis elegans, PID:G1572781
Length = 233
Score = 27.5 bits (58), Expect = 4.6
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -1
Query: 182 HSSWLFWRSRPKVLLHNHAGHRTDLTAIAY 93
H+ WL R RP+V+L N G L IA+
Sbjct: 143 HALWLMIRIRPQVILCNGPGTCIPLCVIAF 172
>At3g22104.1 68416.m02789 phototropic-responsive NPH3
protein-related contains BTB/POZ domain,
INTERPRO:IPR000210
Length = 506
Score = 27.1 bits (57), Expect = 6.1
Identities = 16/30 (53%), Positives = 19/30 (63%)
Frame = -2
Query: 301 SETLSLSDLVPNSAREKSEPIGRVGFILLE 212
S+ LSL LVP+SARE E I R + LE
Sbjct: 355 SKFLSLITLVPDSARESHEDIYRAIDMYLE 384
>At1g32750.1 68414.m04038 HAC13 protein (HAC13) identical to HAC13
[Arabidopsis thaliana] gi|21105767|gb|AAM34782; contains
Pfam domains, PF00439: Bromodomain and PF00240:
Ubiquitin family
Length = 1919
Score = 27.1 bits (57), Expect = 6.1
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = -2
Query: 268 NSAREKSEPIGRVGFILLEPTLENVFNLDIHRGCS 164
N R +S+ +G V ++LEP ++ F +IH GCS
Sbjct: 807 NLLRNQSDTLGNV--MILEPGDKSPFLGEIHAGCS 839
>At4g14390.1 68417.m02219 ankyrin repeat family protein contains
Pfam profile: PF00023 ankyrin repeat
Length = 694
Score = 26.6 bits (56), Expect = 8.1
Identities = 18/59 (30%), Positives = 28/59 (47%)
Frame = +2
Query: 2 PHWESLKNFSSCWVLL*LFNMARSAWHSYTDTQLPLSPFGVRHDCATTLLVWIARTATM 178
PH+ + ++ +L + + + HS T +PL P R D TLL+ A ATM
Sbjct: 475 PHYIFQERWTLALLLYAIHSRGFESVHSLTKPSVPLDPKNNR-DYVNTLLLVAALVATM 532
>At1g06490.1 68414.m00688 glycosyl transferase family 48 protein
contains Pfam profile: PF02364 1,3-beta-glucan synthase
Length = 1933
Score = 26.6 bits (56), Expect = 8.1
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = -3
Query: 258 EKSPNLSDV*VLYYWNLHWKMFLIWTFIVAVLAIQTKSVVA 136
++ P + V +WNL+ +W F+ VL++QT +VA
Sbjct: 479 KRKPKTNFVEARTFWNLYRSFDRMWMFL--VLSLQTMIIVA 517
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,643,686
Number of Sequences: 28952
Number of extensions: 266649
Number of successful extensions: 631
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 762235320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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