Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30382
         (667 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.14 |vma3||V-type ATPase subunit c|Schizosaccharomyces po...    74   2e-14
SPAC732.01 |vma11||V-type ATPase proteolipid subunit|Schizosacch...    56   6e-09
SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces...    36   0.005
SPAC4D7.11 |||conserved fungal protein|Schizosaccharomyces pombe...    28   1.4  
SPBC428.08c |clr4||histone H3 methyltransferase Clr4|Schizosacch...    27   2.4  
SPBC725.07 |pex5||peroxisomal targeting signal receptor |Schizos...    27   3.2  
SPCC1322.13 |ade6|min1|phosphoribosylaminoimidazole carboxylase ...    25   7.4  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    25   9.8  

>SPAC1B3.14 |vma3||V-type ATPase subunit c|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 161

 Score = 74.1 bits (174), Expect = 2e-14
 Identities = 36/39 (92%), Positives = 37/39 (94%)
 Frame = +2

Query: 2   GDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYL 118
           GDAGVRGTAQQPRLFV MILILIFAEVLGLYGLIVA+ L
Sbjct: 113 GDAGVRGTAQQPRLFVAMILILIFAEVLGLYGLIVALLL 151


>SPAC732.01 |vma11||V-type ATPase proteolipid
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 162

 Score = 55.6 bits (128), Expect = 6e-09
 Identities = 26/39 (66%), Positives = 31/39 (79%)
 Frame = +2

Query: 2   GDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYL 118
           GD GV+   +Q R+FV M+LILIFAEVLGLYGLIV + L
Sbjct: 115 GDRGVQSFMRQDRIFVSMVLILIFAEVLGLYGLIVGLIL 153


>SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 199

 Score = 35.9 bits (79), Expect = 0.005
 Identities = 16/39 (41%), Positives = 24/39 (61%)
 Frame = +2

Query: 2   GDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYL 118
           G +     AQ   LFV ++++ IF  VLGL+GLIV + +
Sbjct: 153 GSSAALADAQDASLFVKVLVVEIFGSVLGLFGLIVGLLI 191



 Score = 30.7 bits (66), Expect = 0.20
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = +2

Query: 2   GDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAI 112
           G + + G  + PR+    ++ +IF EV+ +Y LI+AI
Sbjct: 69  GTSILGGAVKAPRIKTKNLISIIFCEVVAIYSLIIAI 105


>SPAC4D7.11 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 281

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
 Frame = -1

Query: 124 CVQVDGDD-KSV--KTQYFSENKNKNHSDE*PRLLSSTT 17
           C++VD +D K +  K+QY +EN N N  +  P L S+TT
Sbjct: 233 CIEVDSEDWKDLVWKSQYATENANTNSINNSP-LSSNTT 270


>SPBC428.08c |clr4||histone H3 methyltransferase
           Clr4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 490

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -3

Query: 266 VEGCPKPYARWTRYRRRPSLCASSDSDNEHRGS 168
           + GC    A W R +RR    ++SDSD+ H  S
Sbjct: 47  LSGCSAVLAEWKRRKRRLK-GSNSDSDSPHHAS 78


>SPBC725.07 |pex5||peroxisomal targeting signal receptor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 516 RFLSTYQFYLRVTSSATSEDINLDYFSNKAK 608
           R +S    Y+RV S+    +INL YF + AK
Sbjct: 497 RAVSLQPQYVRVRSNMAVSNINLGYFEDAAK 527


>SPCC1322.13 |ade6|min1|phosphoribosylaminoimidazole carboxylase
           Ade6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 552

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 8/20 (40%), Positives = 17/20 (85%)
 Frame = -2

Query: 534 DMSIEIAKECSLLSPKIKHM 475
           D  +E++K+C+LL+ +I+H+
Sbjct: 58  DAIVELSKKCTLLTTEIEHI 77


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
           Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +3

Query: 81  YWVFTDLSSPSTCTQNKRPEHTPLPSP 161
           YW +T  +SP+   +N R    P P P
Sbjct: 497 YWYYTVFNSPTIIEKNFRQSVGPKPIP 523


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,667,167
Number of Sequences: 5004
Number of extensions: 56259
Number of successful extensions: 141
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)