Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30382
(667 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0267 + 42410174-42410252,42410679-42411097 69 4e-12
12_01_0443 - 3498848-3498980,3500504-3500789,3500928-3501006 66 2e-11
11_01_0440 - 3358786-3358918,3359861-3360146,3360460-3360538 66 2e-11
05_01_0043 - 295041-295173,296252-296537,296616-296697 66 2e-11
02_04_0181 - 20705307-20705439,20705991-20706037,20706181-207062... 56 3e-08
01_05_0664 + 24122958-24123070,24123184-24123261,24125040-241252... 33 0.20
05_04_0228 - 19224901-19224991,19225095-19225219,19225293-192254... 30 1.4
02_02_0419 - 10009686-10012568 30 1.4
09_06_0223 + 21659549-21659729,21659888-21659979 29 4.4
07_03_0800 + 21600050-21600106,21601506-21602663,21603029-21603520 29 4.4
06_03_0492 - 21386587-21386700,21387471-21387599,21387715-213877... 29 4.4
05_03_0591 + 15892772-15893412,15893478-15893910 28 5.8
>01_07_0267 + 42410174-42410252,42410679-42411097
Length = 165
Score = 68.5 bits (160), Expect = 4e-12
Identities = 33/39 (84%), Positives = 34/39 (87%)
Frame = +2
Query: 2 GDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYL 118
GDAGVR AQQP+LFVGMILILIFAE LGLYGLIV I L
Sbjct: 117 GDAGVRANAQQPKLFVGMILILIFAEALGLYGLIVGIIL 155
Score = 30.3 bits (65), Expect = 1.4
Identities = 12/29 (41%), Positives = 21/29 (72%)
Frame = +2
Query: 32 QPRLFVGMILILIFAEVLGLYGLIVAIYL 118
+P L + I+ ++ A VLG+YGLI+A+ +
Sbjct: 48 RPELVMKSIVPVVMAGVLGIYGLIIAVII 76
>12_01_0443 - 3498848-3498980,3500504-3500789,3500928-3501006
Length = 165
Score = 66.1 bits (154), Expect = 2e-11
Identities = 32/39 (82%), Positives = 33/39 (84%)
Frame = +2
Query: 2 GDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYL 118
GDAGVR AQQP+LFVGMILILIFAE L LYGLIV I L
Sbjct: 117 GDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIIL 155
Score = 30.3 bits (65), Expect = 1.4
Identities = 12/29 (41%), Positives = 21/29 (72%)
Frame = +2
Query: 32 QPRLFVGMILILIFAEVLGLYGLIVAIYL 118
+P L + I+ ++ A VLG+YGLI+A+ +
Sbjct: 48 RPELVMKSIVPVVMAGVLGIYGLIIAVII 76
>11_01_0440 - 3358786-3358918,3359861-3360146,3360460-3360538
Length = 165
Score = 66.1 bits (154), Expect = 2e-11
Identities = 32/39 (82%), Positives = 33/39 (84%)
Frame = +2
Query: 2 GDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYL 118
GDAGVR AQQP+LFVGMILILIFAE L LYGLIV I L
Sbjct: 117 GDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIIL 155
Score = 30.3 bits (65), Expect = 1.4
Identities = 12/29 (41%), Positives = 21/29 (72%)
Frame = +2
Query: 32 QPRLFVGMILILIFAEVLGLYGLIVAIYL 118
+P L + I+ ++ A VLG+YGLI+A+ +
Sbjct: 48 RPELVMKSIVPVVMAGVLGIYGLIIAVII 76
>05_01_0043 - 295041-295173,296252-296537,296616-296697
Length = 166
Score = 66.1 bits (154), Expect = 2e-11
Identities = 32/39 (82%), Positives = 33/39 (84%)
Frame = +2
Query: 2 GDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYL 118
GDAGVR AQQP+LFVGMILILIFAE L LYGLIV I L
Sbjct: 118 GDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIIL 156
Score = 30.3 bits (65), Expect = 1.4
Identities = 12/29 (41%), Positives = 21/29 (72%)
Frame = +2
Query: 32 QPRLFVGMILILIFAEVLGLYGLIVAIYL 118
+P L + I+ ++ A VLG+YGLI+A+ +
Sbjct: 49 RPELVMKSIVPVVMAGVLGIYGLIIAVII 77
>02_04_0181 -
20705307-20705439,20705991-20706037,20706181-20706229,
20706685-20707055
Length = 199
Score = 56.0 bits (129), Expect = 3e-08
Identities = 27/35 (77%), Positives = 29/35 (82%)
Frame = +2
Query: 14 VRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYL 118
+R AQQP+LFVGMILILIFAE L LYGLIV I L
Sbjct: 155 LRANAQQPKLFVGMILILIFAEALALYGLIVGIIL 189
Score = 30.3 bits (65), Expect = 1.4
Identities = 12/29 (41%), Positives = 21/29 (72%)
Frame = +2
Query: 32 QPRLFVGMILILIFAEVLGLYGLIVAIYL 118
+P L + I+ ++ A VLG+YGLI+A+ +
Sbjct: 50 RPELVMKSIVPVVMAGVLGIYGLIIAVII 78
>01_05_0664 +
24122958-24123070,24123184-24123261,24125040-24125210,
24125288-24125456
Length = 176
Score = 33.1 bits (72), Expect = 0.20
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +2
Query: 2 GDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYL 118
G + AQ LFV +++I IF LGL+G+IV I +
Sbjct: 128 GSSCALSDAQNSSLFVKILVIEIFGSALGLFGVIVGIIM 166
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +2
Query: 2 GDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYL 118
G + + + PR+ ++ +IF E + +YG+IVAI L
Sbjct: 44 GSSLIGAAIKAPRITSKNLISVIFCEAVAIYGVIVAIIL 82
>05_04_0228 -
19224901-19224991,19225095-19225219,19225293-19225410,
19225554-19225618,19225760-19225839,19225942-19226005,
19227341-19227480,19227571-19227694,19227781-19227840,
19227922-19227990,19228139-19228288,19229182-19229289,
19229573-19229648,19229960-19230054,19231729-19231803,
19231923-19232043,19232136-19232308,19232647-19232813,
19232944-19233301
Length = 752
Score = 30.3 bits (65), Expect = 1.4
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -2
Query: 309 EICENEQGTNVIYKSGRVPETLCKVDPLPATTI 211
E+ +NE+ NVI + G VP +C + PA +
Sbjct: 115 ELAKNEEVVNVIVEGGAVPALVCHLKEPPAVAV 147
>02_02_0419 - 10009686-10012568
Length = 960
Score = 30.3 bits (65), Expect = 1.4
Identities = 30/98 (30%), Positives = 45/98 (45%)
Frame = -2
Query: 531 MSIEIAKECSLLSPKIKHMCNKLIKYWGVIAR*HSCSIKP*LRFDRFYKKFLVKIYRFTS 352
++I + + +L P +K M + L Y G S + P +K LV S
Sbjct: 498 LNISVNQISGVLPPSLKFMRSALAIYLGSNNLTGSVPLLP--------EKLLVLDLSRNS 549
Query: 351 LDAEQPQQQGCTGLEICENEQGTNVIYKSGRVPETLCK 238
L PQ+ G E+ E + +N+I SG VPETLC+
Sbjct: 550 LSGPFPQEFGAP--ELVELDVSSNMI--SGIVPETLCR 583
>09_06_0223 + 21659549-21659729,21659888-21659979
Length = 90
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -3
Query: 227 YRRRPSLCASSDSDNEHRGSEHGRRE 150
++RR S DNE +G +HGRRE
Sbjct: 35 WQRRKRDTNGSGKDNEGKGGQHGRRE 60
>07_03_0800 + 21600050-21600106,21601506-21602663,21603029-21603520
Length = 568
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/28 (42%), Positives = 20/28 (71%), Gaps = 2/28 (7%)
Frame = -1
Query: 208 CARLQTQIMSIEA--RSTGDGSGVCSGR 131
C+R++TQ+ ++A R+TG G G +GR
Sbjct: 529 CSRMKTQMSKMKAARRATGGGGGAAAGR 556
>06_03_0492 -
21386587-21386700,21387471-21387599,21387715-21387790,
21387898-21387950,21388034-21388095,21388164-21388274,
21388361-21388527,21388804-21388869,21389416-21389505,
21389592-21389740,21390182-21390316,21390399-21390454,
21390630-21390663,21391908-21392018
Length = 450
Score = 28.7 bits (61), Expect = 4.4
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Frame = +2
Query: 155 VARAPSLYAHYLSLKTRTGM---VVAGSGSTLHRVSGTLPLLYI 277
+ R+P + H LSL + GM +VA GS H + PL++I
Sbjct: 21 IGRSPRMQYHSLSLANQGGMEVDIVANGGSDPHLLLRENPLIHI 64
>05_03_0591 + 15892772-15893412,15893478-15893910
Length = 357
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -3
Query: 146 CVFRAFILCTGRWRR*VRKDPILQRK 69
C RA ++C RWRR + DP QR+
Sbjct: 28 CAVRASLVCK-RWRRLLTDDPCFQRR 52
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,775,214
Number of Sequences: 37544
Number of extensions: 404197
Number of successful extensions: 1058
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1032
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1056
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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