Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30382
         (667 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29190| Best HMM Match : No HMM Matches (HMM E-Value=.)              77   2e-14
SB_22642| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.64 
SB_23441| Best HMM Match : IncA (HMM E-Value=2.5)                      30   1.9  
SB_8349| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.6  
SB_4395| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.4  
SB_23967| Best HMM Match : SRCR (HMM E-Value=5.4e-11)                  29   4.5  
SB_47374| Best HMM Match : RAMP (HMM E-Value=7.4)                      28   5.9  
SB_42811| Best HMM Match : SRCR (HMM E-Value=0)                        28   5.9  
SB_58150| Best HMM Match : ig (HMM E-Value=3.7e-24)                    28   7.9  
SB_55577| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_29190| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 156

 Score = 76.6 bits (180), Expect = 2e-14
 Identities = 37/39 (94%), Positives = 38/39 (97%)
 Frame = +2

Query: 2   GDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYL 118
           GDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVA+ L
Sbjct: 113 GDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALIL 151


>SB_22642| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1574

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
 Frame = -3

Query: 155  REWCVF---RAFILCTGRWRR*VRKDPILQRK*E*ESFRRIT*AAEQYHARLH 6
            R WCV+   R+ I CT RW R V   P  + +   +S RR+    E   + L+
Sbjct: 931  RGWCVYHMGRSLIACTRRWMRKVACSPSKETRPHRQSSRRLASQQESQQSLLN 983


>SB_23441| Best HMM Match : IncA (HMM E-Value=2.5)
          Length = 927

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +2

Query: 248 VSGTLPLLYITFVPCSFSHISRPVQPCCCGCSASRD 355
           V+  +P+L++  +PC   ++S     CCC C   RD
Sbjct: 407 VAVAVPILFLISLPCLLVNMS-----CCCSCKPKRD 437


>SB_8349| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1104

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 29/117 (24%), Positives = 49/117 (41%), Gaps = 5/117 (4%)
 Frame = -1

Query: 433 AFMFNKTMIEV*SFLQKVFS--KNIQIHVSRCGAAAATRLHRSGDM*KRAGNKCNIQEWK 260
           A+ F +   EV   L  +F+  KNIQ  +  C    +T     G   +R  +KC +    
Sbjct: 57  AYAFGELETEVELILAVIFATPKNIQ-EMDVCPCHRSTL----GIGWRRGSHKCRVPAPL 111

Query: 259 GARNPMQGGPATGDDHPCARLQTQIMSIEARSTGDGSGV---CSGRLFCVQVDGDDK 98
            A N  +G   +GD      +  +I+ +  R    GS +   C G L   ++  D++
Sbjct: 112 AAHNMTRGKLPSGDRGVSKSISKEIVRVTGRFVPVGSAICRSCRGDLILKEIASDEE 168


>SB_4395| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 74

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = -1

Query: 187 IMSIEARSTGDGSGVCSGRLFCVQVDGDDKSVKTQYFSENKNKN 56
           + ++  +STGD S VC G +F    D   K +  Q   E K  N
Sbjct: 15  LSALNKKSTGDKSWVCFGNMFMKLPDSKTKDMIIQGLQEVKGFN 58


>SB_23967| Best HMM Match : SRCR (HMM E-Value=5.4e-11)
          Length = 3369

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = -2

Query: 360  FTSLDAEQPQQQGCTGLEICEN--EQGTNVIYKSGRVPETLCKVD 232
            FT  D  +   Q C  LE+C N  E+G    + + R P+   KVD
Sbjct: 2389 FTRPDTNKESCQTCNDLEMCYNREEEGKCRSWNTTRCPDGFVKVD 2433


>SB_47374| Best HMM Match : RAMP (HMM E-Value=7.4)
          Length = 158

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 19/53 (35%), Positives = 25/53 (47%)
 Frame = -3

Query: 341 SSRSNKAAPVWRYVKTSREQM*YTRVEGCPKPYARWTRYRRRPSLCASSDSDN 183
           S+  ++ AP W Y KTS +   ++   G P P   WT  R  PSL    D  N
Sbjct: 89  STWRSRLAP-W-YSKTSSD---HSPTTGAPLPMKTWTNSRCLPSLTDRKDEQN 136


>SB_42811| Best HMM Match : SRCR (HMM E-Value=0)
          Length = 854

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 10/34 (29%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -2

Query: 306 ICENEQGTNVIYKSGRVPETLCKVDPLPA-TTIP 208
           +C NE+  N +++ G+    +C  +P+   TT+P
Sbjct: 564 VCSNEREYNALHRKGKNAGAVCSNEPIEVPTTVP 597


>SB_58150| Best HMM Match : ig (HMM E-Value=3.7e-24)
          Length = 456

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -3

Query: 263 EGCPKPYARWTRY 225
           +G PKP+ +WTRY
Sbjct: 46  DGLPKPFVKWTRY 58


>SB_55577| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 272

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +2

Query: 302 HISRPVQPCCCGC 340
           H+  PV PCCC C
Sbjct: 77  HVELPVSPCCCLC 89


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,387,778
Number of Sequences: 59808
Number of extensions: 444891
Number of successful extensions: 1115
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1026
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1115
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1717720750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)