Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30381
         (655 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    29   0.044
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    25   0.54 
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    25   0.54 
AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    23   2.9  
AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory recept...    21   6.7  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 28.7 bits (61), Expect = 0.044
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
 Frame = -3

Query: 332 FVLCSKHLVYS-SVMFNYE*DKLDECDLM*YLTYLVYLICMYVFHYM*S*YCSSIIFYCF 156
           F+L + HL+    + + Y    L  C  + +  +L++L+C+Y F      YC+ II  C 
Sbjct: 245 FILFTVHLLLLVCIYYFYYMHLLFCCAFIIFTMHLLFLLCIYYF------YCALIILLCI 298

Query: 155 LKQC 144
              C
Sbjct: 299 YYFC 302



 Score = 27.5 bits (58), Expect = 0.10
 Identities = 14/60 (23%), Positives = 29/60 (48%)
 Frame = -3

Query: 332 FVLCSKHLVYSSVMFNYE*DKLDECDLM*YLTYLVYLICMYVFHYM*S*YCSSIIFYCFL 153
           F++ + HL++      +    L    L  +  +L++L C+Y F+     +   ++FYC L
Sbjct: 173 FIIFTMHLLFCCAFIFFNMHLLFLLCLDYFTLHLLFLPCIYYFYSAFIIFTIHLLFYCVL 232



 Score = 24.2 bits (50), Expect = 0.95
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -3

Query: 260 CDLM*YLTYLVYLICMYVFHYM*S*YCSSIIFYCFLKQC 144
           C  + +  +L++L+C+Y F      +C+ IIF   L  C
Sbjct: 151 CAFIIFTVHLLFLLCIYHF------FCAFIIFTMHLLFC 183



 Score = 21.4 bits (43), Expect = 6.7
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = -3

Query: 233 LVYLICMYVFHY 198
           L+ L+C+Y F+Y
Sbjct: 232 LIILLCIYYFYY 243


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 25.0 bits (52), Expect = 0.54
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 113  KNEI*IYLKFVQKIPINFLKFIIVKL 36
            KNEI +Y+ ++Q  PI F+  I   L
Sbjct: 1268 KNEIGVYITYLQLEPIGFVFLIFFAL 1293


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 25.0 bits (52), Expect = 0.54
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 113  KNEI*IYLKFVQKIPINFLKFIIVKL 36
            KNEI +Y+ ++Q  PI F+  I   L
Sbjct: 1268 KNEIGVYITYLQLEPIGFVFLIFFAL 1293


>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 7/23 (30%), Positives = 12/23 (52%)
 Frame = +1

Query: 76  FWTNFRYIYISFFCIVCYLVIVE 144
           FW+ F  + + + C  CY  + E
Sbjct: 274 FWSAFFIVNVLYICNQCYNTVEE 296


>AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory receptor
           candidate 20 protein.
          Length = 393

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = +1

Query: 67  IGIFWTNFRYIYISFFCIVCYLVIVEHCF 153
           +G+F+  F  +Y+S+  I  ++  +  CF
Sbjct: 166 LGVFFKRFLPVYVSYLLI--FVQQIPFCF 192


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,522
Number of Sequences: 336
Number of extensions: 2858
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16865010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)