Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30381
         (655 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|...    26   4.1  
SPAC824.08 |gda1|gdp1|guanosine-diphosphatase Gda1|Schizosacchar...    25   7.2  
SPBC36.03c |||spermidine family transporter |Schizosaccharomyces...    25   7.2  

>SPAC3A12.05c |taf2||TATA-binding protein associated factor
           Taf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1174

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 12/40 (30%), Positives = 16/40 (40%)
 Frame = +1

Query: 202 WNTYIHIR*TRYVKYYIKXXXXXXXXXXXNITEEYTRCLL 321
           W  Y H+R     K+  K           NITE Y +C +
Sbjct: 789 WVGYYHLRMAYLEKFCFKDSTIPKSNDFSNITEYYVKCAM 828


>SPAC824.08 |gda1|gdp1|guanosine-diphosphatase
           Gda1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 556

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +2

Query: 200 NGTHTYILDRLGMSNITLNHTHLAY 274
           +G H Y+LD  G       H+HL Y
Sbjct: 307 DGDHKYVLDYNGEQYELYQHSHLGY 331


>SPBC36.03c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 538

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 8/34 (23%), Positives = 20/34 (58%)
 Frame = +1

Query: 58  RKFIGIFWTNFRYIYISFFCIVCYLVIVEHCFKK 159
           + ++G  WT +   ++ FF  +C L+ ++ C+ +
Sbjct: 247 KSYLGWRWTEYITSFMGFFSTLC-LLFMKECYSR 279


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,340,658
Number of Sequences: 5004
Number of extensions: 42648
Number of successful extensions: 78
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)