Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30381
         (655 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81133-3|CAB03443.3|  527|Caenorhabditis elegans Hypothetical pr...    28   6.7  
AC006673-10|AAP31433.1|  361|Caenorhabditis elegans Serpentine r...    27   8.8  

>Z81133-3|CAB03443.3|  527|Caenorhabditis elegans Hypothetical
           protein T28B8.5 protein.
          Length = 527

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +1

Query: 67  IGIFWTNFRYIYISFFC 117
           +G+FWT  +Y++  F C
Sbjct: 1   MGVFWTGLKYVFTDFSC 17


>AC006673-10|AAP31433.1|  361|Caenorhabditis elegans Serpentine
           receptor, class w protein89 protein.
          Length = 361

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = +1

Query: 1   LIYCYKLP**GCNLTIINFRKFIGIFWTNFRYIYISFFCIVCYLVIVEHCFKK 159
           +IY YK    G NLT +N  + + +F  +   I  S  C++C+   + H ++K
Sbjct: 283 IIYFYKAVWRG-NLTYLNLAENVKLFCHSLFTINASIHCLICF--SMSHQYRK 332


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,773,336
Number of Sequences: 27780
Number of extensions: 234567
Number of successful extensions: 419
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 419
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)