Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30378
         (1044 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.15c |cdc3||profilin|Schizosaccharomyces pombe|chr 1|||Ma...    50   4e-07
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr...    26   7.6  

>SPAC4A8.15c |cdc3||profilin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 127

 Score = 50.4 bits (115), Expect = 4e-07
 Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
 Frame = +3

Query: 78  MSWQDYVDKQLMASRCVTKAAIAGHDGN-VWAKSEGFEISKDEVAKIVAGFEN 233
           MSWQ YVD  L+ +  + +AAI    G+ VWA S GF +S  E+  + AGF++
Sbjct: 1   MSWQAYVDTSLLGTGKIDRAAIVSRAGDSVWAASAGFNLSPQEIQGLAAGFQD 53



 Score = 36.7 bits (81), Expect = 0.005
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +2

Query: 326 KVGVHCMKTQQAVXISXXEEPIQPQQAASVVEKLGEYLITCGY 454
           K G+ C+ T+  + +S   E   P +AA + E L +YL+  GY
Sbjct: 85  KEGIICVATKLCILVSHYPETTLPGEAAKITEALADYLVGVGY 127


>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 749

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 15/61 (24%), Positives = 30/61 (49%)
 Frame = -3

Query: 301 SVPLR*MYPRARYRHAPLVSSDSFSKPATIFATSSFEISKPSDFAHTLPS*PAMAAFVTH 122
           +VPL   Y  +  +    + S   SKP+    +S  + + P +  H++PS  ++A   ++
Sbjct: 487 NVPLYPAYNSSPVQTRTSLFSSRLSKPSNPIVSSVSQANAPKNALHSMPSPTSLANLPSN 546

Query: 121 L 119
           L
Sbjct: 547 L 547


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,069,446
Number of Sequences: 5004
Number of extensions: 47219
Number of successful extensions: 82
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 547228964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)