Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30378
         (1044 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_05_0039 - 8461234-8461368,8461502-8461639,8461743-8461865           52   1e-06
10_05_0037 + 8451675-8451797,8451901-8452038,8452163-8452297           52   1e-06
06_01_0373 + 2689317-2689439,2690597-2690734,2691616-2691750           49   5e-06
12_02_0932 + 24519204-24519380,24520074-24520128,24520251-245222...    30   2.6  
12_01_0685 + 5848758-5849162,5849282-5849341,5849803-5849919,585...    30   2.6  
11_06_0690 + 26303733-26306540                                         30   3.5  

>10_05_0039 - 8461234-8461368,8461502-8461639,8461743-8461865
          Length = 131

 Score = 51.6 bits (118), Expect = 1e-06
 Identities = 26/60 (43%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
 Frame = +3

Query: 78  MSWQDYVDKQLMAS---RCVTKAAIAGHDGNVWAKSEGF-EISKDEVAKIVAGFENESLL 245
           MSWQ YVD+ LM       +T AAI GHDG VWA+S  F +   +E+  I+  F+    L
Sbjct: 1   MSWQTYVDEHLMCEIEGHHLTSAAIVGHDGTVWAQSAAFPQFKPEEMTNIMKDFDEPGFL 60



 Score = 40.3 bits (90), Expect = 0.002
 Identities = 18/43 (41%), Positives = 26/43 (60%)
 Frame = +2

Query: 323 GKVGVHCMKTQQAVXISXXEEPIQPQQAASVVEKLGEYLITCG 451
           G  G+   KT QA+ +   +EP+ P Q   VVE+LG+YL+  G
Sbjct: 88  GSGGITVKKTGQALVVGIYDEPMTPGQCNMVVERLGDYLVEQG 130


>10_05_0037 + 8451675-8451797,8451901-8452038,8452163-8452297
          Length = 131

 Score = 51.6 bits (118), Expect = 1e-06
 Identities = 26/60 (43%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
 Frame = +3

Query: 78  MSWQDYVDKQLMAS---RCVTKAAIAGHDGNVWAKSEGF-EISKDEVAKIVAGFENESLL 245
           MSWQ YVD+ LM       +T AAI GHDG VWA+S  F +   +E+  I+  F+    L
Sbjct: 1   MSWQTYVDEHLMCEIEGHHLTSAAIVGHDGTVWAQSAAFPQFKPEEMTNIMKDFDEPGFL 60



 Score = 40.3 bits (90), Expect = 0.002
 Identities = 18/43 (41%), Positives = 26/43 (60%)
 Frame = +2

Query: 323 GKVGVHCMKTQQAVXISXXEEPIQPQQAASVVEKLGEYLITCG 451
           G  G+   KT QA+ +   +EP+ P Q   VVE+LG+YL+  G
Sbjct: 88  GSGGITVKKTGQALVVGIYDEPMTPGQCNMVVERLGDYLVEQG 130


>06_01_0373 + 2689317-2689439,2690597-2690734,2691616-2691750
          Length = 131

 Score = 49.2 bits (112), Expect = 5e-06
 Identities = 26/60 (43%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
 Frame = +3

Query: 78  MSWQDYVDKQLMAS---RCVTKAAIAGHDGNVWAKSEGF-EISKDEVAKIVAGFENESLL 245
           MSWQ YVD  LM       +T AAI GHDG+VWA+S  F +   +E+  I+  F+    L
Sbjct: 1   MSWQAYVDDHLMCEIDGNHLTAAAIVGHDGSVWAQSPNFPQYKPEEITGIMKDFDEPGSL 60



 Score = 35.1 bits (77), Expect = 0.093
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = +2

Query: 323 GKVGVHCMKTQQAVXISXXEEPIQPQQAASVVEKLGEYLITCG 451
           G  G+   KT  ++ +   +EP+ P Q   +VE+LG+YLI  G
Sbjct: 88  GTGGICVKKTGLSLILGIYDEPMTPGQCNMIVERLGDYLIEQG 130


>12_02_0932 +
           24519204-24519380,24520074-24520128,24520251-24522202,
           24522288-24522446,24522878-24523049,24523131-24523429,
           24524037-24524285
          Length = 1020

 Score = 30.3 bits (65), Expect = 2.6
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +3

Query: 171 KSEGFEISKDEVAKIVAGFENESLLTSG 254
           K+ GF+I  DE+  IV G +++ L+T G
Sbjct: 92  KAAGFQICADELGSIVEGHDSKKLITHG 119


>12_01_0685 +
           5848758-5849162,5849282-5849341,5849803-5849919,
           5850013-5850110,5850470-5851020,5851118-5851221,
           5851298-5851387
          Length = 474

 Score = 30.3 bits (65), Expect = 2.6
 Identities = 21/48 (43%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
 Frame = +2

Query: 17  WRAALELVDP--PGCRNSAPDQNEL-ARLCRQTVNGI*MCHKSCHCRS 151
           W+   ELVDP  PG  N A    EL A LC +T  G   C  S HC++
Sbjct: 227 WQLTGELVDPSRPGDFNQA--MMELGATLCSKTKPGCSQCPVSSHCQA 272


>11_06_0690 + 26303733-26306540
          Length = 935

 Score = 29.9 bits (64), Expect = 3.5
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 206 GEDCGWL*E*ITANEWRVTIAGTRVHLPQWHRPYHPR 316
           GEDC      +     R+T+AG ++   +WHR  H R
Sbjct: 287 GEDCTT----VLNQSGRLTVAGAKISFRRWHRSVHAR 319


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,057,161
Number of Sequences: 37544
Number of extensions: 368652
Number of successful extensions: 755
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3082779744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)