Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30378
         (1044 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55375-5|AAC69045.1|  126|Caenorhabditis elegans Profilin protei...    54   2e-07
AY530910-1|AAT01435.1|  126|Caenorhabditis elegans profilin-3 pr...    54   2e-07
AY530908-1|AAT01433.1|  132|Caenorhabditis elegans profilin-1 pr...    37   0.021
AL034393-15|CAA22318.1|  132|Caenorhabditis elegans Hypothetical...    37   0.021
U40941-2|AAA81708.3|  131|Caenorhabditis elegans Profilin protei...    37   0.027
AY530909-1|AAT01434.1|  131|Caenorhabditis elegans profilin-2 pr...    37   0.027

>U55375-5|AAC69045.1|  126|Caenorhabditis elegans Profilin protein 3
           protein.
          Length = 126

 Score = 53.6 bits (123), Expect = 2e-07
 Identities = 27/60 (45%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
 Frame = +3

Query: 78  MSWQDYVDKQLMASRCVTKAAIAGHDGNVWAKSEGFEISKDEVAKIVAGFEN-ESLLTSG 254
           MSW D ++  L+ S  V+KAAI G DG VWAKS+ F IS +E       F + ++LL +G
Sbjct: 1   MSWSDIINNNLIGSGNVSKAAILGFDGAVWAKSDNFNISVEEAVAAGKAFTSLDALLGTG 60



 Score = 29.1 bits (62), Expect = 5.5
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +2

Query: 323 GKVGVHCMKTQQAVXISXXEEPIQPQQAASVVEKLGEYLITCGY 454
           G  G    KT QAV IS  E+ +QP+  +     L +Y  +  Y
Sbjct: 83  GGSGFFIYKTIQAVIISIYEKGLQPEMCSKTTGALADYFRSIKY 126


>AY530910-1|AAT01435.1|  126|Caenorhabditis elegans profilin-3
           protein.
          Length = 126

 Score = 53.6 bits (123), Expect = 2e-07
 Identities = 27/60 (45%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
 Frame = +3

Query: 78  MSWQDYVDKQLMASRCVTKAAIAGHDGNVWAKSEGFEISKDEVAKIVAGFEN-ESLLTSG 254
           MSW D ++  L+ S  V+KAAI G DG VWAKS+ F IS +E       F + ++LL +G
Sbjct: 1   MSWSDIINNNLIGSGNVSKAAILGFDGAVWAKSDNFNISVEEAVAAGKAFTSLDALLGTG 60



 Score = 29.1 bits (62), Expect = 5.5
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +2

Query: 323 GKVGVHCMKTQQAVXISXXEEPIQPQQAASVVEKLGEYLITCGY 454
           G  G    KT QAV IS  E+ +QP+  +     L +Y  +  Y
Sbjct: 83  GGSGFFIYKTIQAVIISIYEKGLQPEMCSKTTGALADYFRSIKY 126


>AY530908-1|AAT01433.1|  132|Caenorhabditis elegans profilin-1
           protein.
          Length = 132

 Score = 37.1 bits (82), Expect = 0.021
 Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
 Frame = +3

Query: 84  WQDYVDKQLMASRCVTKAAIAGH-DGNVWAKSEG---FEISKDEVAKIVAGFEN 233
           W  Y+D    A+  + + AI G  DG+VWA++E    F+ S++E+   VA F +
Sbjct: 4   WNAYIDTMTAAAPSIKRCAIVGAADGSVWARTEADNVFKASEEELKTFVALFND 57


>AL034393-15|CAA22318.1|  132|Caenorhabditis elegans Hypothetical
           protein Y18D10A.20 protein.
          Length = 132

 Score = 37.1 bits (82), Expect = 0.021
 Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
 Frame = +3

Query: 84  WQDYVDKQLMASRCVTKAAIAGH-DGNVWAKSEG---FEISKDEVAKIVAGFEN 233
           W  Y+D    A+  + + AI G  DG+VWA++E    F+ S++E+   VA F +
Sbjct: 4   WNAYIDTMTAAAPSIKRCAIVGAADGSVWARTEADNVFKASEEELKTFVALFND 57


>U40941-2|AAA81708.3|  131|Caenorhabditis elegans Profilin protein 2
           protein.
          Length = 131

 Score = 36.7 bits (81), Expect = 0.027
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
 Frame = +3

Query: 84  WQDYVDKQLMASRCVTKAAIAGHDGNVWAKS---EGFEISKDEVAKIVAGFEN 233
           W DY+      S  + +AAI G DG+VWA+S     F  ++ E+ +  A F +
Sbjct: 4   WDDYIKLLFGKSPAIKRAAIIGSDGSVWARSGDANAFRATEVELKRFAALFND 56


>AY530909-1|AAT01434.1|  131|Caenorhabditis elegans profilin-2
           protein.
          Length = 131

 Score = 36.7 bits (81), Expect = 0.027
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
 Frame = +3

Query: 84  WQDYVDKQLMASRCVTKAAIAGHDGNVWAKS---EGFEISKDEVAKIVAGFEN 233
           W DY+      S  + +AAI G DG+VWA+S     F  ++ E+ +  A F +
Sbjct: 4   WDDYIKLLFGKSPAIKRAAIIGSDGSVWARSGDANAFRATEVELKRFAALFND 56


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,653,664
Number of Sequences: 27780
Number of extensions: 295093
Number of successful extensions: 621
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 621
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2772493070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)