Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30378
         (1044 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.          122   5e-30
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    23   4.5  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   4.5  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   7.9  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   7.9  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   7.9  

>AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.
          Length = 126

 Score =  122 bits (294), Expect = 5e-30
 Identities = 56/84 (66%), Positives = 66/84 (78%)
 Frame = +3

Query: 78  MSWQDYVDKQLMASRCVTKAAIAGHDGNVWAKSEGFEISKDEVAKIVAGFENESLLTSGA 257
           MS QDYVDKQL+ASRCVTKAAIAGHDGN+WAKSEGFE+SK+E+ K+V GFE + +LTS  
Sbjct: 1   MSCQDYVDKQLLASRCVTKAAIAGHDGNLWAKSEGFEVSKEELTKLVQGFEEQDILTSSG 60

Query: 258 *R*RARGYIYLSGTDHIIRANXAR 329
                  YIYLSGTD +IRA   +
Sbjct: 61  VTLAGNRYIYLSGTDRVIRAKLGK 84



 Score = 85.0 bits (201), Expect = 1e-18
 Identities = 42/67 (62%), Positives = 51/67 (76%), Gaps = 1/67 (1%)
 Frame = +2

Query: 257 VTIAGTR-VHLPQWHRPYHPREXGKVGVHCMKTQQAVXISXXEEPIQPQQAASVVEKLGE 433
           VT+AG R ++L    R    +  GKVGVHCMKT QAV +S  E+PIQPQQAASVVEKLG+
Sbjct: 61  VTLAGNRYIYLSGTDRVIRAK-LGKVGVHCMKTTQAVVVSLYEDPIQPQQAASVVEKLGD 119

Query: 434 YLITCGY 454
           YL++CGY
Sbjct: 120 YLVSCGY 126


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 23.0 bits (47), Expect = 4.5
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +2

Query: 14  RWRAALELVDPPGCRNSAP 70
           RW    E VDP GC N+ P
Sbjct: 394 RWFTYQETVDPAGC-NAGP 411


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.0 bits (47), Expect = 4.5
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
 Frame = -1

Query: 177 PTL-PTHCHHDRQWQLL*HI--*MPLTVCR---HNLASSF*SGAEFLQP 49
           PT+ P H HH  Q Q L H+    P T+       + S + SGA+F  P
Sbjct: 345 PTMGPPHHHHHHQTQSLQHLHYRQPPTLSESYSSYVNSMYASGAQFATP 393


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 22.2 bits (45), Expect = 7.9
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +2

Query: 35  LVDPPGCRNSAPDQNELARLC 97
           +++PPG R   PD+ ++   C
Sbjct: 647 IIEPPGTRFFYPDRKQVILKC 667


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.2 bits (45), Expect = 7.9
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +2

Query: 35  LVDPPGCRNSAPDQNELARLC 97
           +++PPG R   PD+ ++   C
Sbjct: 737 IIEPPGTRFFYPDRKQVILKC 757


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 22.2 bits (45), Expect = 7.9
 Identities = 9/24 (37%), Positives = 10/24 (41%)
 Frame = +3

Query: 90  DYVDKQLMASRCVTKAAIAGHDGN 161
           D +   L   RC  K    G DGN
Sbjct: 447 DVISGNLEKGRCTGKIVTVGSDGN 470


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,795
Number of Sequences: 438
Number of extensions: 3596
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 34704288
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)