Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30378
         (1044 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g56600.1 68418.m07065 profilin 5 (PRO5) (PRF3) identical to S...    47   2e-05
At4g29350.1 68417.m04193 profilin 2 (PRO2) (PFN2) (PRF2) identic...    47   2e-05
At2g19770.1 68415.m02310 profilin 4 (PRO4) (PFN4) identical to p...    47   2e-05
At4g29340.1 68417.m04192 profilin 3 (PRO3) (PFN3) identical to p...    46   4e-05
At2g19760.1 68415.m02309 profilin 1 (PRO1) (PFN1) (PRF1) / aller...    46   4e-05

>At5g56600.1 68418.m07065 profilin 5 (PRO5) (PRF3) identical to
           SP|Q9FE63 Profilin 5 {Arabidopsis thaliana}
          Length = 168

 Score = 47.2 bits (107), Expect = 2e-05
 Identities = 26/65 (40%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
 Frame = +3

Query: 63  RHQIKMSWQDYVDKQLM---ASRCVTKAAIAGHDGNVWAKSEGF-EISKDEVAKIVAGFE 230
           + +  MSWQ YVD  LM   A   +T AAI G DG+VWA+S  F ++  +E+  I   F 
Sbjct: 33  KKKTNMSWQTYVDDHLMCDVAGNRLTAAAILGQDGSVWAQSNNFPQVKPEEIQGIKDDFT 92

Query: 231 NESLL 245
               L
Sbjct: 93  TPGTL 97



 Score = 38.3 bits (85), Expect = 0.008
 Identities = 20/43 (46%), Positives = 23/43 (53%)
 Frame = +2

Query: 323 GKVGVHCMKTQQAVXISXXEEPIQPQQAASVVEKLGEYLITCG 451
           G  GV   KT  A+     +EP+ P Q   VVE LGEYLI  G
Sbjct: 125 GAGGVTIKKTTLALVFGIYDEPMTPGQCNMVVENLGEYLIESG 167


>At4g29350.1 68417.m04193 profilin 2 (PRO2) (PFN2) (PRF2) identical
           to profilin 2 SP:Q42418 GI:1353772 from [Arabidopsis
           thaliana]; identical to cDNA profilin (PRF2) GI:9965570
          Length = 131

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 26/55 (47%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
 Frame = +3

Query: 78  MSWQDYVDKQLMAS---RCVTKAAIAGHDGNVWAKSEGF-EISKDEVAKIVAGFE 230
           MSWQ YVD  LM       +T AAI G DG+VWA+S  F ++   E+A I   FE
Sbjct: 1   MSWQSYVDDHLMCEVEGNHLTHAAIFGQDGSVWAQSSAFPQLKPAEIAGINKDFE 55



 Score = 36.7 bits (81), Expect = 0.025
 Identities = 19/43 (44%), Positives = 24/43 (55%)
 Frame = +2

Query: 323 GKVGVHCMKTQQAVXISXXEEPIQPQQAASVVEKLGEYLITCG 451
           G  GV   KT QA+     +EP+   Q   VVE+LG+YLI  G
Sbjct: 88  GPGGVTIKKTTQALVFGIYDEPMTGGQCNLVVERLGDYLIESG 130


>At2g19770.1 68415.m02310 profilin 4 (PRO4) (PFN4) identical to
           profilin 4 SP:Q38905 GI:1353768 from [Arabidopsis
           thaliana]
          Length = 134

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 25/58 (43%), Positives = 33/58 (56%), Gaps = 7/58 (12%)
 Frame = +3

Query: 78  MSWQDYVDKQLMAS------RCVTKAAIAGHDGNVWAKSEGF-EISKDEVAKIVAGFE 230
           MSWQ YVD+ LM          +T AAI GHDG+VWA+S  F +    E+  I+  F+
Sbjct: 1   MSWQAYVDEHLMCDVGDGQGHHLTAAAIIGHDGSVWAQSANFPQFKPQEITDIMKDFD 58



 Score = 39.9 bits (89), Expect = 0.003
 Identities = 19/43 (44%), Positives = 25/43 (58%)
 Frame = +2

Query: 323 GKVGVHCMKTQQAVXISXXEEPIQPQQAASVVEKLGEYLITCG 451
           G  G+   KT Q++     EEP+ P Q   VVE+LG+YLI  G
Sbjct: 91  GAGGITIKKTGQSMVFGLYEEPVTPGQCNMVVERLGDYLIEQG 133


>At4g29340.1 68417.m04192 profilin 3 (PRO3) (PFN3) identical to
           profilin 3 SP:Q38904 GI:1353765 from [Arabidopsis
           thaliana]
          Length = 134

 Score = 46.0 bits (104), Expect = 4e-05
 Identities = 25/58 (43%), Positives = 33/58 (56%), Gaps = 7/58 (12%)
 Frame = +3

Query: 78  MSWQDYVDKQLMAS------RCVTKAAIAGHDGNVWAKSEGF-EISKDEVAKIVAGFE 230
           MSWQ YVD+ LM          +T AAI GHDG+VWA+S  F +    E + I+  F+
Sbjct: 1   MSWQTYVDEHLMCDVGDGQGHHLTAAAIVGHDGSVWAQSANFPQFKGQEFSDIMKDFD 58



 Score = 38.3 bits (85), Expect = 0.008
 Identities = 18/43 (41%), Positives = 24/43 (55%)
 Frame = +2

Query: 323 GKVGVHCMKTQQAVXISXXEEPIQPQQAASVVEKLGEYLITCG 451
           G  G+   KT Q+      EEP+ P Q   VVE+LG+YL+  G
Sbjct: 91  GAGGITIKKTGQSCVFGIYEEPVTPGQCNMVVERLGDYLLEQG 133


>At2g19760.1 68415.m02309 profilin 1 (PRO1) (PFN1) (PRF1) / allergen
           Ara t 8 identical to profilin 1 (Allergen Ara t 8)
           SP:Q42449 GI:1353770 from [Arabidopsis thaliana]
          Length = 131

 Score = 46.0 bits (104), Expect = 4e-05
 Identities = 26/60 (43%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
 Frame = +3

Query: 78  MSWQDYVDKQLMAS---RCVTKAAIAGHDGNVWAKSEGF-EISKDEVAKIVAGFENESLL 245
           MSWQ YVD  LM       +T AAI G DG+VWA+S  F ++   E+  I   FE    L
Sbjct: 1   MSWQSYVDDHLMCDVEGNHLTAAAILGQDGSVWAQSAKFPQLKPQEIDGIKKDFEEPGFL 60



 Score = 35.5 bits (78), Expect = 0.059
 Identities = 18/40 (45%), Positives = 23/40 (57%)
 Frame = +2

Query: 323 GKVGVHCMKTQQAVXISXXEEPIQPQQAASVVEKLGEYLI 442
           G  GV   KT QA+     +EP+   Q   VVE+LG+YLI
Sbjct: 88  GPGGVTIKKTNQALVFGFYDEPMTGGQCNLVVERLGDYLI 127


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,825,783
Number of Sequences: 28952
Number of extensions: 271372
Number of successful extensions: 504
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 499
length of database: 12,070,560
effective HSP length: 82
effective length of database: 9,696,496
effective search space used: 2569571440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)