Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30376
         (613 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.20 |grx1||glutaredoxin Grx1|Schizosaccharomyces pombe|c...    31   0.13 
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual     27   2.1  
SPBC215.03c |csn1||COP9/signalosome complex subunit Csn1|Schizos...    27   2.8  
SPBC12C2.04 |||NAD binding dehydrogenase family protein|Schizosa...    26   4.9  
SPBC1709.19c |||NifU-like protein|Schizosaccharomyces pombe|chr ...    26   4.9  

>SPAC4F10.20 |grx1||glutaredoxin Grx1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 101

 Score = 31.1 bits (67), Expect = 0.13
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +1

Query: 160 VYNMRYCPYAQRTILALNAKQIDYEVVNIDLMTN 261
           V+   YCPY   T   +  K+I  +V  IDLM N
Sbjct: 19  VFAKSYCPYCHATEKVIADKKIKAQVYQIDLMNN 52


>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -1

Query: 292 AKALLVVSHSGLSSDQYLQPHSQFV 218
           AK L ++   GL  D+ LQPHS+ V
Sbjct: 43  AKRLFLIVGDGLRPDKLLQPHSEKV 67


>SPBC215.03c |csn1||COP9/signalosome complex subunit
           Csn1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 422

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 14/45 (31%), Positives = 26/45 (57%)
 Frame = +1

Query: 22  VLEYVLPYTGVPFRNMSAIKDSRNINFNTKHLRKGDPLPPFNGKL 156
           +L+Y++PY+ +PF  + A+    + NF  K+L +       NGK+
Sbjct: 312 LLDYLIPYSALPFSKI-AVDFHIDENFIEKNLLEIIEAKKLNGKV 355


>SPBC12C2.04 |||NAD binding dehydrogenase family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -2

Query: 585 SLPSKNTVPRFFNCSW-MKSKALWYAAHA 502
           S+P +  +PRF   SW  KS A+   AH+
Sbjct: 263 SIPKEERIPRFTAASWKYKSGAVGILAHS 291


>SPBC1709.19c |||NifU-like protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 260

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 11/34 (32%), Positives = 23/34 (67%)
 Frame = +3

Query: 384 PLLPQDPLKKALDKIIVEASAPIQSLFIKILKFS 485
           P+L ++PLK A D  I+E+ + I ++  ++++ S
Sbjct: 135 PVLSEEPLKGASDTQILESDSQIVAMIKELIETS 168


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,430,077
Number of Sequences: 5004
Number of extensions: 46450
Number of successful extensions: 108
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)