Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30376
(613 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_8108| Best HMM Match : GST_N (HMM E-Value=3.9e-14) 66 2e-11
SB_3922| Best HMM Match : No HMM Matches (HMM E-Value=.) 54 7e-08
SB_48592| Best HMM Match : Galactosyl_T (HMM E-Value=1.5e-26) 34 0.10
SB_11755| Best HMM Match : GST_C (HMM E-Value=2.7e-05) 33 0.18
SB_46097| Best HMM Match : zf-CCHC (HMM E-Value=7.2e-05) 29 2.2
SB_59355| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_14676| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_35487| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.2
>SB_8108| Best HMM Match : GST_N (HMM E-Value=3.9e-14)
Length = 238
Score = 66.1 bits (154), Expect = 2e-11
Identities = 28/47 (59%), Positives = 35/47 (74%)
Frame = +1
Query: 112 HLRKGDPLPPFNGKLRVYNMRYCPYAQRTILALNAKQIDYEVVNIDL 252
HL GDP PP KLR+Y+MR+CPYA+R L L AK +DYE +NI+L
Sbjct: 5 HLSNGDPRPPPGDKLRLYSMRFCPYAERPRLVLAAKGVDYECININL 51
Score = 53.2 bits (122), Expect = 2e-07
Identities = 24/75 (32%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Frame = +3
Query: 255 DKPEW-LTTKSAFAKVPAIEIAEDVTIYESLVTXEYLDEVYPKRPLLPQDPLKKALDKII 431
+KP+W L + VP IE+ + + ESL+ EYLDE++P+ P+ P D +K +++
Sbjct: 53 NKPDWYLAEPNPRGLVPMIEMPDGRLLPESLLCCEYLDELFPQNPMYPSDAFEKNRQRLL 112
Query: 432 VEASAPIQSLFIKIL 476
++ + S F ++L
Sbjct: 113 IDRFGKVTSSFYQML 127
Score = 33.1 bits (72), Expect = 0.18
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +2
Query: 500 GACAAYHKALDFIQEQLKNRGTVFLDGSEPGYADYMIW 613
G +K L + +LKN+ F G +PG AD+M+W
Sbjct: 138 GQTETLNKELSLYENELKNK--TFFAGEKPGMADFMLW 173
>SB_3922| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 236
Score = 54.4 bits (125), Expect = 7e-08
Identities = 27/56 (48%), Positives = 37/56 (66%), Gaps = 2/56 (3%)
Frame = +1
Query: 91 NINFNTKHLRKGD--PLPPFNGKLRVYNMRYCPYAQRTILALNAKQIDYEVVNIDL 252
+I H+ KG P P N KLR+Y+MR+CP+A+R L L AK +DYE VN++L
Sbjct: 8 SITMPVTHISKGSSRPAKPQN-KLRLYSMRFCPFAERPRLVLAAKGLDYECVNVNL 62
Score = 48.4 bits (110), Expect = 5e-06
Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Frame = +3
Query: 258 KPEWLTTK-SAFAKVPAIEIAEDVTIYESLVTXEYLDEVYPKRPLLPQDPLKKALDKIIV 434
KPEW T KVP +E + I ES++ E+L++ Y K PL P DP K+ K++
Sbjct: 65 KPEWFQTHPDCEGKVPTLETMDGKLIPESVIICEFLEDYYRKIPLYPCDPYAKSRQKLLA 124
Query: 435 E 437
+
Sbjct: 125 Q 125
>SB_48592| Best HMM Match : Galactosyl_T (HMM E-Value=1.5e-26)
Length = 492
Score = 33.9 bits (74), Expect = 0.10
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +3
Query: 261 PEWLTTKSAFAKVPAIEIAEDVTIYESLVTXEYLDEVYPKR-PLLPQDPLKKA 416
PEWL VP I + +YES + E++DE + +LP+DP K+A
Sbjct: 299 PEWLAINPN-GLVPVI-VHNGNAVYESSICIEFIDEAFSTPVTILPKDPYKRA 349
Score = 32.7 bits (71), Expect = 0.24
Identities = 11/28 (39%), Positives = 21/28 (75%)
Frame = +1
Query: 157 RVYNMRYCPYAQRTILALNAKQIDYEVV 240
++YN +CP+AQR +A+ AK+ ++E +
Sbjct: 263 KLYNAWFCPFAQRAWIAMLAKKAEFEYI 290
>SB_11755| Best HMM Match : GST_C (HMM E-Value=2.7e-05)
Length = 142
Score = 33.1 bits (72), Expect = 0.18
Identities = 22/48 (45%), Positives = 28/48 (58%), Gaps = 5/48 (10%)
Frame = +3
Query: 354 EYLDEVYPKRPLLPQ-DPLKKAL----DKIIVEASAPIQSLFIKILKF 482
EYLDE P PLLP+ DP K+AL I PIQ+L K+L++
Sbjct: 2 EYLDETRPDPPLLPRGDPHKRALVRQISMTIASGIQPIQNL--KVLQY 47
>SB_46097| Best HMM Match : zf-CCHC (HMM E-Value=7.2e-05)
Length = 430
Score = 29.5 bits (63), Expect = 2.2
Identities = 16/56 (28%), Positives = 29/56 (51%)
Frame = +1
Query: 16 SQVLEYVLPYTGVPFRNMSAIKDSRNINFNTKHLRKGDPLPPFNGKLRVYNMRYCP 183
+Q +++ LP TG+ ++ S I D ++ +R+ DPL F G ++ CP
Sbjct: 66 AQKMKFSLP-TGIVEQSASNIHDIKSSKSQNDKMRQDDPLCKFCGLRHSFSQGKCP 120
>SB_59355| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 165
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/50 (26%), Positives = 25/50 (50%)
Frame = +2
Query: 401 SFEESIGQNYCRSIGAYSVAFYKDSKILRHCQ*GACAAYHKALDFIQEQL 550
S++E IGQ++ +I A + S +L HC G + + ++ + L
Sbjct: 74 SYQEDIGQHFDEAIAFIDEARSRGSSVLVHCHAGVSRSATVTVAYVMQHL 123
>SB_14676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 905
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/56 (28%), Positives = 29/56 (51%)
Frame = +1
Query: 16 SQVLEYVLPYTGVPFRNMSAIKDSRNINFNTKHLRKGDPLPPFNGKLRVYNMRYCP 183
+Q +++ LP TG+ ++ S I D ++ +R+ DPL F G ++ CP
Sbjct: 176 TQKMKFSLP-TGIVEQSASNIYDIKSSKSQNNKVRQDDPLCKFCGLKHSFSKGKCP 230
>SB_35487| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 250
Score = 28.3 bits (60), Expect = 5.2
Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = +1
Query: 1 GVRVISQVLEYVLPYTG-VPFRNMSAIKDSRNINFNTKHLRKGDPLPPFNGKLRVYNMRY 177
G+R + YV T VP+ +R +++ +++ G P+ + +Y +RY
Sbjct: 76 GIRYVPYGTRYVSYGTRYVPYGIRYVPYGTRYVSYGIRYVPYGTCYVPYGTRYVLYGIRY 135
Query: 178 CPYAQRTI 201
PY R +
Sbjct: 136 VPYGTRYV 143
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,914,361
Number of Sequences: 59808
Number of extensions: 333204
Number of successful extensions: 760
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 756
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1499981500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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