Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30376
         (613 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    23   2.4  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   5.4  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    22   5.4  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   7.2  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   7.2  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   7.2  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   7.2  

>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 11/38 (28%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +1

Query: 157 RVYNMRYCPYAQRTILALNAKQIDYEVVNIDL-MTNLS 267
           R + +RY PY QR  +  +  ++D  +  ++  MT+L+
Sbjct: 462 RPFEVRYDPYTQRVEILDSVDRLDNLMAQVNTEMTHLT 499


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -2

Query: 99  VDISAVLNCRHISKWYTS 46
           VDIS ++N R+ +K YTS
Sbjct: 516 VDISKLVNKRNNAKIYTS 533


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -2

Query: 369 PHLNIXLSLSFRKWS 325
           PH N    L+ RKWS
Sbjct: 109 PHRNSDRDLNIRKWS 123


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +1

Query: 127 DPLPPFNGKLRVYNMRYCPYAQRTILALNAK 219
           DPL P +  LR+Y      Y  R  L L+ +
Sbjct: 157 DPLIPVHFALRIYRNGTVNYLMRRHLILSCQ 187


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +1

Query: 127 DPLPPFNGKLRVYNMRYCPYAQRTILALNAK 219
           DPL P +  LR+Y      Y  R  L L+ +
Sbjct: 157 DPLIPVHFALRIYRNGTVNYLMRRHLILSCQ 187


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +1

Query: 127 DPLPPFNGKLRVYNMRYCPYAQRTILALNAK 219
           DPL P +  LR+Y      Y  R  L L+ +
Sbjct: 208 DPLIPVHFALRIYRNGTVNYLMRRHLILSCQ 238


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +1

Query: 127 DPLPPFNGKLRVYNMRYCPYAQRTILALNAK 219
           DPL P +  LR+Y      Y  R  L L+ +
Sbjct: 157 DPLIPVHFALRIYRNGTVNYLMRRHLILSCQ 187


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,657
Number of Sequences: 438
Number of extensions: 3030
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18093444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)