Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30375
         (500 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25385| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.076
SB_56625| Best HMM Match : DUF1443 (HMM E-Value=3.1)                   29   2.2  
SB_43502| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.6  
SB_51536| Best HMM Match : Trypsin (HMM E-Value=0)                     27   6.6  
SB_43903| Best HMM Match : FHA (HMM E-Value=4.6e-13)                   27   6.6  
SB_37758| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.6  
SB_47669| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  
SB_2203| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.7  

>SB_25385| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 859

 Score = 33.9 bits (74), Expect = 0.076
 Identities = 13/47 (27%), Positives = 28/47 (59%)
 Frame = +1

Query: 130 YDLNQAKELFEIFVKEHNREYKDDADRELHYQSFKKHLAEINN*TRR 270
           +++ +   +F+ +VK+H + YKD+ +     + FK +L  I++  RR
Sbjct: 547 HNVEKVHRVFDKYVKKHKKNYKDNKEHHTRREHFKHNLRFIHSKNRR 593


>SB_56625| Best HMM Match : DUF1443 (HMM E-Value=3.1)
          Length = 248

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +1

Query: 46  AKMNFVSVALLIATVVMASSAETDTPRHYDLNQA 147
           A + F++  +L+ TV+ A+  ETD  R    NQA
Sbjct: 98  AAVLFIAAMILVVTVLWATKQETDRNRQMSRNQA 131


>SB_43502| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 189

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +1

Query: 16  SKPVPLLIHCAKMNFVSVALLIATVVMASSAETDTPRHYDL 138
           S P+ LL+HC   +     L   T +++SS   DTP  Y +
Sbjct: 50  SMPMGLLLHCNHGSTEKAILNNITDIVSSSLPIDTPVKYQI 90


>SB_51536| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 347

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
 Frame = +1

Query: 367 KFCDFSLSECYSKRNKCIV--TACKMFK 444
           K CDF +  C+ K  KC V    CK+ K
Sbjct: 45  KTCDFCVKPCFDKHTKCAVYKNFCKVPK 72


>SB_43903| Best HMM Match : FHA (HMM E-Value=4.6e-13)
          Length = 553

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +1

Query: 364 HKFCDFSLSECYSKRNKCIVTAC 432
           H FC++ L     KRN C +  C
Sbjct: 388 HSFCEYCLQSWLRKRNTCPICRC 410


>SB_37758| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 382

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
 Frame = +1

Query: 106 AETDTPRHYD---LNQAKELFEIFVK-EHNREYKDDADRELHYQSFKK 237
           AE D  R+ +     Q  E ++ FVK +H +  K  ADREL  +  +K
Sbjct: 250 AEEDKKRYVEELRAYQQSEQYQAFVKRQHVKRTKHPADRELEIRELRK 297


>SB_47669| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 708

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +1

Query: 112 TDTPRHYDLNQAKELFEIFVKEHNREYKDDADRELHYQSFKKHLAE 249
           +D P+  +L+  + LFE    +      DD  RE+ + +FK  L E
Sbjct: 520 SDEPKRSELDPQRTLFETGQGQGQVRRTDDEKREMFFIAFKDILPE 565


>SB_2203| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 202

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +1

Query: 112 TDTPRHYDLNQAKELFEIFVKEHNREYKDDADRELHYQSFKKHLAE 249
           +D P+  +L+  + LFE    +      DD  RE+ + +FK  L E
Sbjct: 139 SDEPKRSELDPQRTLFETGQGQGQVRRTDDEKREMFFIAFKDILPE 184


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,777,039
Number of Sequences: 59808
Number of extensions: 251738
Number of successful extensions: 583
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 583
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1087245449
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)