Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30371
         (646 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1...    27   2.3  
SPAC2F3.01 ||SPAC323.09|mannosyltransferase complex subunit |Sch...    27   3.1  
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac...    25   7.1  
SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory...    25   7.1  
SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr...    25   7.1  

>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1004

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +3

Query: 9   ENRNHRHNNPGERANRHSKIDDTVI 83
           + +NH+ N P + AN   ++DDT++
Sbjct: 552 KRKNHKENLPAQLANGIYRLDDTLV 576


>SPAC2F3.01 ||SPAC323.09|mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +1

Query: 4   TLKIEIIDTITQARGQID-IPRSTIRLYGVANAPSECPGAANVCSQRNGNCNAGQLCL 174
           TL +  +   T A G+++ IPR   +L+   N P       N C +++ + N  Q  L
Sbjct: 45  TLSLSDVSDDTSAPGEMEKIPRVIHQLWKDENIPERWSNTVNSCRRQHPDENGWQFIL 102


>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
           Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1373

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 34  TQARGQIDIPRSTIRLYGVANAPSECPGAA 123
           T  RGQ+ +    + L  V+N P   PGAA
Sbjct: 652 TDGRGQLSLLNIVVELKKVSNHPYLFPGAA 681


>SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory
           subunit Dfp1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 545

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -1

Query: 247 NYSLSAKVNSWRHRSDNSFPHFHW 176
           N S  A++  W+ +   +FPHF +
Sbjct: 131 NSSQKARLQEWKRQYKKAFPHFRF 154


>SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 537

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -1

Query: 382 WSINVDYIAEGYPKLACLVIFKFTL 308
           W   ++YI + YP +A   I  FTL
Sbjct: 438 WLAMINYITDSYPSVAGSAIAAFTL 462


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,616,062
Number of Sequences: 5004
Number of extensions: 53351
Number of successful extensions: 118
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)