Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30371
         (646 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30644| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_17140| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_40134| Best HMM Match : Calx-beta (HMM E-Value=0)                   29   3.2  
SB_9975| Best HMM Match : 7tm_2 (HMM E-Value=1.9e-38)                  28   5.7  
SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)                28   7.5  
SB_10214| Best HMM Match : VWA (HMM E-Value=1.30321e-43)               28   7.5  
SB_22169| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  

>SB_30644| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1887

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = +1

Query: 103  SECPGAANVCSQRNGNCNAGQ-LCL 174
            S+CPG+   C Q   NC A Q LC+
Sbjct: 1637 SDCPGSQKCCRQHFANCLASQMLCI 1661


>SB_17140| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1236

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +3

Query: 30   NNPGERANRHSKIDDTVIRCCQRAERVSRGCQRLLAE 140
            N   +RAN++S+ D+ ++R C+    + R CQ  L +
Sbjct: 1167 NQKSQRANQNSQRDENLLRNCEDLVNLLRKCQVRLVQ 1203


>SB_40134| Best HMM Match : Calx-beta (HMM E-Value=0)
          Length = 517

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = +2

Query: 512 WTDLNNLKITFFYHVTTKTFNL 577
           +T +NNL++TF  + TTKT N+
Sbjct: 230 YTKINNLEVTFLSNETTKTVNV 251


>SB_9975| Best HMM Match : 7tm_2 (HMM E-Value=1.9e-38)
          Length = 1101

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = +3

Query: 366 STLIDHYSKLTTAFRFLSYKSNSKHCL*NTFTFDFLIGIVLIFKFSCKNG 515
           ST+ DHY ++T  F        S H       FD ++  V++F   CK G
Sbjct: 859 STVFDHYHRITPVFP-------SCHAKREHIAFDIVVLAVVVFWLLCKTG 901


>SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
          Length = 3891

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 14/34 (41%), Positives = 15/34 (44%)
 Frame = +1

Query: 100 PSECPGAANVCSQRNGNCNAGQLCLPNGSGGRSC 201
           PS  P   N CS    NC   QLCL     G +C
Sbjct: 463 PSRQPAMPNPCSP--SNCGCQQLCLVTVESGCTC 494


>SB_10214| Best HMM Match : VWA (HMM E-Value=1.30321e-43)
          Length = 821

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
 Frame = +1

Query: 97  APSECPGA---ANVCSQRNGNCNAGQLCLPNGSGGRSCLNGDAN 219
           AP  CP     A+ CS+       G LC  +G   R+C +G  N
Sbjct: 519 APPSCPAEDDLAHECSEDKDCKTEGDLCCQDGCKQRTCKDGVKN 562


>SB_22169| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 285

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = +1

Query: 103 SECPGAANVCSQRNGNCNAGQLCLPNGSGGRS 198
           S C G  N+C  R   C +      NGS  R+
Sbjct: 74  SHCSGVCNICRHRTQECKSDDNKSLNGSNSRT 105


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,957,272
Number of Sequences: 59808
Number of extensions: 386494
Number of successful extensions: 992
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 989
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)