Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30371
(646 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z79696-1|CAB01972.1| 1584|Caenorhabditis elegans Hypothetical pr... 37 0.011
Z78018-7|CAB01449.2| 2577|Caenorhabditis elegans Hypothetical pr... 31 0.70
Z78013-10|CAB01427.2| 2577|Caenorhabditis elegans Hypothetical p... 31 0.70
Z68296-6|CAE17754.1| 195|Caenorhabditis elegans Hypothetical pr... 31 0.70
U64608-9|AAX88815.1| 319|Caenorhabditis elegans Egg laying defe... 31 0.70
U64608-8|AAO91671.1| 316|Caenorhabditis elegans Egg laying defe... 31 0.70
U64608-7|AAX88814.1| 422|Caenorhabditis elegans Egg laying defe... 31 0.70
U64608-6|AAB04597.2| 470|Caenorhabditis elegans Egg laying defe... 31 0.70
AY314773-1|AAQ84880.1| 2596|Caenorhabditis elegans flamingo-like... 31 0.70
AF097319-1|AAD12252.1| 470|Caenorhabditis elegans Sox domain pr... 31 0.70
Z81491-2|CAB04020.1| 181|Caenorhabditis elegans Hypothetical pr... 29 3.7
U40799-2|AAA81480.1| 712|Caenorhabditis elegans Hypothetical pr... 28 6.5
AF016439-2|AAB65897.1| 176|Caenorhabditis elegans Hypothetical ... 28 6.5
Z82282-3|CAB05275.1| 638|Caenorhabditis elegans Hypothetical pr... 27 8.6
U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical pr... 27 8.6
>Z79696-1|CAB01972.1| 1584|Caenorhabditis elegans Hypothetical protein
F54F3.1 protein.
Length = 1584
Score = 37.1 bits (82), Expect = 0.011
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = +1
Query: 76 RLYGVANAPSECPGAANVCSQRNGNCNAGQLCLPNGSGGRSC 201
+++G+ P C G + CS+ NG C LCLP G G C
Sbjct: 1535 KVFGILAVPKSCVGPSTPCSEDNGGCQ--HLCLP-GQNGAVC 1573
>Z78018-7|CAB01449.2| 2577|Caenorhabditis elegans Hypothetical protein
F15B9.7 protein.
Length = 2577
Score = 31.1 bits (67), Expect = 0.70
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +1
Query: 55 DIPRSTIR-LYGVANAPSECPGAANVCSQRNGNCNAGQLCLPNGSGGRSC 201
D+ STI+ ++ V C + CS +G C+A C+ N GGR C
Sbjct: 1507 DVDFSTIKEMHKVGQVHEGCKHRKDFCSTSDGQCSATSKCV-NRWGGRIC 1555
>Z78013-10|CAB01427.2| 2577|Caenorhabditis elegans Hypothetical
protein F15B9.7 protein.
Length = 2577
Score = 31.1 bits (67), Expect = 0.70
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +1
Query: 55 DIPRSTIR-LYGVANAPSECPGAANVCSQRNGNCNAGQLCLPNGSGGRSC 201
D+ STI+ ++ V C + CS +G C+A C+ N GGR C
Sbjct: 1507 DVDFSTIKEMHKVGQVHEGCKHRKDFCSTSDGQCSATSKCV-NRWGGRIC 1555
>Z68296-6|CAE17754.1| 195|Caenorhabditis elegans Hypothetical
protein C46C2.6a protein.
Length = 195
Score = 31.1 bits (67), Expect = 0.70
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +1
Query: 109 CPGAANVCSQRNGNCNAGQLCLPNGSGGRSCL 204
CP + Q +G C G C+P+ S G C+
Sbjct: 60 CPSDYDFIRQHSGRCADGTACIPDSSFGEPCI 91
>U64608-9|AAX88815.1| 319|Caenorhabditis elegans Egg laying
defective protein 13,isoform d protein.
Length = 319
Score = 31.1 bits (67), Expect = 0.70
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = -2
Query: 198 TPSPTSIG*AQLSGVAVTVSLRANVGSPGTL 106
TPSPT+I + LSG + SL N GS G L
Sbjct: 112 TPSPTAIPQSPLSGFRLPYSLGTNYGSDGQL 142
>U64608-8|AAO91671.1| 316|Caenorhabditis elegans Egg laying
defective protein 13,isoform b protein.
Length = 316
Score = 31.1 bits (67), Expect = 0.70
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = -2
Query: 198 TPSPTSIG*AQLSGVAVTVSLRANVGSPGTL 106
TPSPT+I + LSG + SL N GS G L
Sbjct: 109 TPSPTAIPQSPLSGFRLPYSLGTNYGSDGQL 139
>U64608-7|AAX88814.1| 422|Caenorhabditis elegans Egg laying
defective protein 13,isoform c protein.
Length = 422
Score = 31.1 bits (67), Expect = 0.70
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = -2
Query: 198 TPSPTSIG*AQLSGVAVTVSLRANVGSPGTL 106
TPSPT+I + LSG + SL N GS G L
Sbjct: 215 TPSPTAIPQSPLSGFRLPYSLGTNYGSDGQL 245
>U64608-6|AAB04597.2| 470|Caenorhabditis elegans Egg laying
defective protein 13,isoform a protein.
Length = 470
Score = 31.1 bits (67), Expect = 0.70
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = -2
Query: 198 TPSPTSIG*AQLSGVAVTVSLRANVGSPGTL 106
TPSPT+I + LSG + SL N GS G L
Sbjct: 263 TPSPTAIPQSPLSGFRLPYSLGTNYGSDGQL 293
>AY314773-1|AAQ84880.1| 2596|Caenorhabditis elegans flamingo-like
protein FMI-1 protein.
Length = 2596
Score = 31.1 bits (67), Expect = 0.70
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +1
Query: 55 DIPRSTIR-LYGVANAPSECPGAANVCSQRNGNCNAGQLCLPNGSGGRSC 201
D+ STI+ ++ V C + CS +G C+A C+ N GGR C
Sbjct: 1507 DVDFSTIKEMHKVGQVHEGCKHRKDFCSTSDGQCSATSKCV-NRWGGRIC 1555
>AF097319-1|AAD12252.1| 470|Caenorhabditis elegans Sox domain
protein COG-2 protein.
Length = 470
Score = 31.1 bits (67), Expect = 0.70
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = -2
Query: 198 TPSPTSIG*AQLSGVAVTVSLRANVGSPGTL 106
TPSPT+I + LSG + SL N GS G L
Sbjct: 263 TPSPTAIPQSPLSGFRLPYSLGTNYGSDGQL 293
>Z81491-2|CAB04020.1| 181|Caenorhabditis elegans Hypothetical
protein D1086.2 protein.
Length = 181
Score = 28.7 bits (61), Expect = 3.7
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = -1
Query: 538 NFQII*VCPFLQLNLNINTIP-IKKSNVNVFYKQCFEFDL 422
NF + C ++ +LN+ T ++ N NV KQC+E DL
Sbjct: 67 NFMFVQGCETIERDLNVITCKKLRDKNRNVI-KQCYELDL 105
>U40799-2|AAA81480.1| 712|Caenorhabditis elegans Hypothetical
protein F42C5.4 protein.
Length = 712
Score = 27.9 bits (59), Expect = 6.5
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Frame = -1
Query: 223 NSWRH-RSDNSFPHFHWVGTAVRRCSYRFSASKRWQPR--DTRSARWQHR-ITVSSILEC 56
++W H + D+S P HW GT R C++ + R + + D + ++ IT+ SI
Sbjct: 568 SNWVHSQCDSSIPE-HWKGTWRRGCNHILTRILRSKCKCYDANADECEYNSITLKSIRNY 626
Query: 55 LFALSPGLLCL*FR 14
FA+ + L FR
Sbjct: 627 EFAMKVATMGLIFR 640
>AF016439-2|AAB65897.1| 176|Caenorhabditis elegans Hypothetical
protein R02F11.1 protein.
Length = 176
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/22 (54%), Positives = 13/22 (59%), Gaps = 2/22 (9%)
Frame = +1
Query: 151 CNAGQLCLPNGSGG--RSCLNG 210
CN C P GSGG SC+NG
Sbjct: 135 CNTNNYCCPLGSGGVLGSCVNG 156
>Z82282-3|CAB05275.1| 638|Caenorhabditis elegans Hypothetical
protein T07G12.3 protein.
Length = 638
Score = 27.5 bits (58), Expect = 8.6
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +2
Query: 368 HVD*PLFKINYCFSISKLQIKFETLLIEYIYVRFFNRYSINIQ 496
HV L K+N ++ T LIEY YVR Y I+++
Sbjct: 530 HVHRKLKKLNVSEICETFRLSKVTSLIEYGYVRTMRTYKISVE 572
>U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical protein
C25H3.8 protein.
Length = 2148
Score = 27.5 bits (58), Expect = 8.6
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -1
Query: 208 RSDNSFPHFHWVGTAVRRCSY 146
RSD++ F+WV TA+RR Y
Sbjct: 988 RSDSNLNRFYWVCTAIRREYY 1008
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,373,222
Number of Sequences: 27780
Number of extensions: 301192
Number of successful extensions: 716
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 714
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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