Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30371
         (646 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly id...    29   2.6  
At5g65700.1 68418.m08269 leucine-rich repeat transmembrane prote...    29   3.5  
At4g30070.1 68417.m04277 plant defensin-fusion protein, putative...    27   8.1  

>At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly
            identical to auxin transport protein; BIG [Arabidopsis
            thaliana] GI:21779966; contains Pfam profiles PF02207:
            Putative zinc finger in N-recognin, PF00569: Zinc finger
            ZZ type
          Length = 5098

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 20/81 (24%), Positives = 33/81 (40%)
 Frame = +1

Query: 7    LKIEIIDTITQARGQIDIPRSTIRLYGVANAPSECPGAANVCSQRNGNCNAGQLCLPNGS 186
            LK+E    IT     I++      L  ++  P +CP  +   + ++G C+    C  N  
Sbjct: 3430 LKVEFPIPITACNFMIELDSFYENLQALSLEPLQCPRCSRPVTDKHGICSN---CHENAY 3486

Query: 187  GGRSCLNGDANYLP*LIKNNC 249
              R C N +   L   + N C
Sbjct: 3487 QCRQCRNINYENLDSFLCNEC 3507


>At5g65700.1 68418.m08269 leucine-rich repeat transmembrane protein
           kinase, putative
          Length = 1003

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
 Frame = -3

Query: 161 PALQLPFL--CEQTLAAPGH---SLGALATPYNRIVDLGMSICPLAWVIVSMI 18
           P L  P+L  C+  +A  GH   S G L+     ++ LG+ +C +A+ +V++I
Sbjct: 609 PDLCGPYLGPCKDGVAKGGHQSHSKGPLSASMKLLLVLGLLVCSIAFAVVAII 661


>At4g30070.1 68417.m04277 plant defensin-fusion protein, putative
           contains a C-terminal plant defensin domain, personal
           communication, Bart Thomma
           (Bart.Thomma@agr.kuleuven.ac.be)
          Length = 129

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 14/37 (37%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
 Frame = +1

Query: 100 PSECPGAANVCSQR-NGNCNAGQLCLPNGSGGRSCLN 207
           P +C G A +CSQR  G C     C     GG    N
Sbjct: 80  PKKCDGGAGICSQRCQGQC-CDMNCAQKYIGGHGFCN 115


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,171,350
Number of Sequences: 28952
Number of extensions: 263569
Number of successful extensions: 564
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 564
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1334473344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)