Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30370
(676 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0148 + 1174097-1174289,1174539-1174672,1174760-1175098 99 2e-21
01_07_0123 + 41206782-41206844,41207701-41207782,41208587-412087... 91 6e-19
08_02_0516 + 18080706-18080760,18081796-18081885,18082479-180825... 31 0.84
02_01_0336 + 2397648-2397812,2398367-2398441,2398860-2398975,239... 29 3.4
01_01_0467 - 3446243-3446254,3446331-3446420,3446544-3446816,344... 29 3.4
09_06_0050 + 20493063-20493137,20493253-20493347,20493450-204935... 28 5.9
06_03_0453 + 20953268-20953337,20953364-20953500 28 5.9
03_01_0141 + 1116833-1117082,1117658-1118574,1119417-1119579,111... 28 5.9
02_05_1298 - 35542250-35542831,35543218-35543410,35543511-355438... 28 7.8
>03_01_0148 + 1174097-1174289,1174539-1174672,1174760-1175098
Length = 221
Score = 99 bits (238), Expect = 2e-21
Identities = 42/71 (59%), Positives = 61/71 (85%)
Frame = +1
Query: 250 EEARKIMSKLGLKPVQGVERVTIRKSKNILFVINSPDVYKNPHSDTYIVFGEAKIEDLST 429
+++RK M KLG+KPV GV R+TI+++KNILFV++ PDV+K+P S+TY++FGEAKIEDLS+
Sbjct: 82 KKSRKAMMKLGMKPVTGVSRITIKRAKNILFVVSKPDVFKSPTSETYVIFGEAKIEDLSS 141
Query: 430 QATMAAAERFK 462
Q AA++F+
Sbjct: 142 QLQAQAAQQFR 152
Score = 31.1 bits (67), Expect = 0.84
Identities = 14/18 (77%), Positives = 18/18 (100%)
Frame = +3
Query: 585 IVMSQANVSRAKAVRALK 638
+VM+QA+VSRAKAV+ALK
Sbjct: 189 LVMTQASVSRAKAVKALK 206
>01_07_0123 +
41206782-41206844,41207701-41207782,41208587-41208717,
41208758-41209147
Length = 221
Score = 91.5 bits (217), Expect = 6e-19
Identities = 49/93 (52%), Positives = 64/93 (68%), Gaps = 19/93 (20%)
Frame = +1
Query: 250 EEARKIMSKLGLKPVQGVERVTIRKSKN-------------------ILFVINSPDVYKN 372
+++RK M KLG+K + GV RVTI+KSKN ILFVI+ PDV+K+
Sbjct: 65 KKSRKAMQKLGMKTITGVSRVTIKKSKNAHRIVIYHCILLNFSLHYQILFVISKPDVFKS 124
Query: 373 PHSDTYIVFGEAKIEDLSTQATMAAAERFKAPE 471
P+SDTY++FGEAKIEDLS+Q AAE+FKAP+
Sbjct: 125 PNSDTYVIFGEAKIEDLSSQLQTQAAEQFKAPD 157
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/31 (48%), Positives = 24/31 (77%), Gaps = 3/31 (9%)
Frame = +3
Query: 585 IVMSQANVSRAKAVRALK---NNHLTLLMQL 668
+VM+QA VSR++AV+ALK + +T +M+L
Sbjct: 189 LVMTQATVSRSRAVKALKAANGDIVTAIMEL 219
>08_02_0516 +
18080706-18080760,18081796-18081885,18082479-18082573,
18083658-18083726,18083812-18084393
Length = 296
Score = 31.1 bits (67), Expect = 0.84
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Frame = +2
Query: 380 QTPTLFLVKPRLKICPHRPPWLQLRDSRHQRPQPLA----MTLPQLEDG 514
Q P ++ +L P +PP LQ + HQ+PQP A + PQ E G
Sbjct: 244 QQPPQLQLQSQLHPQPQQPPQLQPQPQLHQQPQPQAELQSQSQPQTEHG 292
>02_01_0336 +
2397648-2397812,2398367-2398441,2398860-2398975,
2399155-2399269,2399360-2399488,2399809-2399856,
2400369-2400448,2400628-2400824,2400916-2401202,
2401281-2401307,2401353-2401538,2401633-2402094,
2402201-2402350,2402612-2402687,2402851-2402978,
2403244-2403435,2403559-2403690,2403767-2403889,
2404128-2404346,2404518-2404679
Length = 1022
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -2
Query: 369 LVYIRRVDDKENVL*FSDCHSLYTLYWFETEFTHYLS 259
L I + ++K+N+L S +L + WF EF+H S
Sbjct: 176 LAQIVKAEEKDNMLRASTLQALSAMIWFMGEFSHISS 212
>01_01_0467 -
3446243-3446254,3446331-3446420,3446544-3446816,
3446898-3447066,3447579-3447646,3447890-3448074,
3448683-3448806
Length = 306
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +2
Query: 326 QRTFSLSSTRLMYTRILIQTPTLFLVKPRL 415
Q+ F +SST+L+Y Q TLF+V P L
Sbjct: 134 QKKFKVSSTQLLYQSCPYQALTLFIVGPFL 163
>09_06_0050 +
20493063-20493137,20493253-20493347,20493450-20493547,
20493684-20493842,20493944-20494055,20494185-20494728,
20494818-20494915,20494990-20495229,20495312-20495426,
20495528-20495732,20495805-20496373
Length = 769
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = -3
Query: 347 MTKRMFFDFLIVTLSTPCTGLRPSLLIIFLASSHH 243
M+ +F FL++ L PC+ R ++ I+++ HH
Sbjct: 3 MSPLLFIVFLLMLLE-PCSSSRSNVYIVYMGERHH 36
>06_03_0453 + 20953268-20953337,20953364-20953500
Length = 68
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Frame = -3
Query: 620 FRSRDVRLGHYYLHVLLIDSSLVYSXXXXXFCY---WCYRLPV 501
+R R+ ++ + YLHV L+ LVY+ Y WCY L +
Sbjct: 14 WRCRNDKVFNGYLHVFLLAPLLVYNATTGGAGYYAQWCYTLGI 56
>03_01_0141 +
1116833-1117082,1117658-1118574,1119417-1119579,
1119668-1120497,1120562-1120570
Length = 722
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = -1
Query: 457 ISQLQPWWPVWTNLQSWLHQK 395
I QL PW P T SWL +K
Sbjct: 110 IKQLHPWIPSTTGRSSWLEEK 130
>02_05_1298 -
35542250-35542831,35543218-35543410,35543511-35543827,
35544144-35544186,35545845-35545900,35546028-35546102,
35546249-35546345,35546422-35546546,35547063-35547167,
35547295-35547432,35547758-35547831,35547995-35548065,
35548168-35548363,35548482-35548572,35549264-35549342,
35549431-35549491,35549745-35549814,35549913-35549987,
35550119-35550194,35550403-35550489,35550744-35550880,
35551000-35551063,35551351-35551415
Length = 958
Score = 27.9 bits (59), Expect = 7.8
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -3
Query: 137 SHCQMMQSLLCASRS*RRWPCQVQSVLAS 51
S C +QSL+ ++ +RWP V S LAS
Sbjct: 422 SLCSSLQSLILSNNKIKRWPGTVFSSLAS 450
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,657,536
Number of Sequences: 37544
Number of extensions: 287217
Number of successful extensions: 764
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 764
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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