Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30370
         (676 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10530| Best HMM Match : UBA (HMM E-Value=0.0016)                    31   0.85 
SB_12501| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_9550| Best HMM Match : GPS (HMM E-Value=1.6e-11)                    28   7.9  
SB_59006| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  
SB_6333| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.9  

>SB_10530| Best HMM Match : UBA (HMM E-Value=0.0016)
          Length = 74

 Score = 31.1 bits (67), Expect = 0.85
 Identities = 14/20 (70%), Positives = 16/20 (80%)
 Frame = +3

Query: 585 IVMSQANVSRAKAVRALKNN 644
           +VM QANVSR KA+ ALK N
Sbjct: 13  LVMQQANVSRNKAIMALKKN 32


>SB_12501| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 130

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +1

Query: 337 LFVINSPDVYKNPHSDTYIVFGEAKIEDLSTQATMAAAER 456
           LF  NSP++    HSD +++   A    LST   +A+  R
Sbjct: 40  LFSSNSPELSAAAHSDLHLLRSSASFSQLSTSRPIASISR 79


>SB_9550| Best HMM Match : GPS (HMM E-Value=1.6e-11)
          Length = 1771

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = -1

Query: 250 LTTRLFRFADDVNASNWVSDSTCIWCTCIFQFW-NVVIRVTVR*CSLFFALLG 95
           L+ RLFR  +  N +   S   C W TC   F     +R   + C++   LLG
Sbjct: 545 LSPRLFRSLN--NRARAFSSEACFWVTCSSHFLPPSAVRYWAKACAVLTCLLG 595


>SB_59006| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1211

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = +1

Query: 415  EDLSTQATMAAAERFKAPETTATGNDAST 501
            E  ST  T+AA+E   APETTA      T
Sbjct: 968  ETTSTPGTLAASETTAAPETTAKPETTET 996


>SB_6333| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 58

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 468 WCLESLSCSHGGLCGQIFNLGFTK 397
           WCL S S S   LC ++  +GF +
Sbjct: 11  WCLYSTSASDSDLCDRVAPMGFNR 34


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,897,797
Number of Sequences: 59808
Number of extensions: 328565
Number of successful extensions: 901
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 900
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)