Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30370
         (676 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g12390.1 68416.m01544 nascent polypeptide associated complex ...   111   5e-25
At5g13850.1 68418.m01619 nascent polypeptide-associated complex ...   110   9e-25
At3g49470.1 68416.m05407 nascent polypeptide-associated complex ...   109   1e-24
At1g33040.1 68414.m04068 nascent polypeptide-associated complex ...   104   6e-23
At4g10480.1 68417.m01720 nascent polypeptide associated complex ...   103   8e-23
At1g03730.1 68414.m00353 expressed protein similar to ESTs gb|AA...    28   5.0  
At4g15840.1 68417.m02409 expressed protein                             28   6.6  
At5g17630.1 68418.m02067 glucose-6-phosphate/phosphate transloca...    27   8.7  

>At3g12390.1 68416.m01544 nascent polypeptide associated complex
           alpha chain protein, putative / alpha-NAC, putative
           similar to alpha-NAC, non-muscle form [Mus musculus]
           GI:1666690; contains Pfam profiles PF01849: NAC domain,
           PF00627: UBA/TS-N domain
          Length = 203

 Score =  111 bits (266), Expect = 5e-25
 Identities = 49/74 (66%), Positives = 64/74 (86%)
 Frame = +1

Query: 250 EEARKIMSKLGLKPVQGVERVTIRKSKNILFVINSPDVYKNPHSDTYIVFGEAKIEDLST 429
           +++RK M KLG+KP+ GV RVT++KSKNILFVI+ PDV+K+P SDTY++FGEAKIEDLS+
Sbjct: 64  KKSRKAMLKLGMKPITGVSRVTVKKSKNILFVISKPDVFKSPASDTYVIFGEAKIEDLSS 123

Query: 430 QATMAAAERFKAPE 471
           Q    AAE+FKAP+
Sbjct: 124 QIQSQAAEQFKAPD 137


>At5g13850.1 68418.m01619 nascent polypeptide-associated complex
           (NAC) domain-containing protein similar to alpha-NAC,
           non-muscle form [Mus musculus] GI:1666690; contains Pfam
           profile PF01849: NAC domain
          Length = 159

 Score =  110 bits (264), Expect = 9e-25
 Identities = 49/73 (67%), Positives = 63/73 (86%)
 Frame = +1

Query: 250 EEARKIMSKLGLKPVQGVERVTIRKSKNILFVINSPDVYKNPHSDTYIVFGEAKIEDLST 429
           +++RK M KLG+KP+ GV RVT++KSKNILFVI+ PDV+K+P SDTY++FGEAKIEDLS+
Sbjct: 60  KKSRKAMLKLGMKPITGVSRVTVKKSKNILFVISKPDVFKSPASDTYVIFGEAKIEDLSS 119

Query: 430 QATMAAAERFKAP 468
           Q    AAE+FKAP
Sbjct: 120 QLQSQAAEQFKAP 132


>At3g49470.1 68416.m05407 nascent polypeptide-associated complex
           (NAC) domain-containing protein similar to alpha-NAC,
           non-muscle form [Mus musculus] GI:1666690; contains Pfam
           profile PF01849: NAC domain
          Length = 217

 Score =  109 bits (263), Expect = 1e-24
 Identities = 48/85 (56%), Positives = 67/85 (78%)
 Frame = +1

Query: 250 EEARKIMSKLGLKPVQGVERVTIRKSKNILFVINSPDVYKNPHSDTYIVFGEAKIEDLST 429
           +++RK M KLG+KPV GV RVTI+++KN+LF I+ PDV+K+PHS+TY++FGEAKIEDLS+
Sbjct: 74  KKSRKAMLKLGMKPVTGVSRVTIKRTKNVLFFISKPDVFKSPHSETYVIFGEAKIEDLSS 133

Query: 430 QATMAAAERFKAPETTATGNDASTT 504
           Q    AA++F+ PE  AT   A  +
Sbjct: 134 QLQTQAAQQFRMPEIGATSQRAEAS 158



 Score = 30.3 bits (65), Expect = 1.2
 Identities = 13/20 (65%), Positives = 19/20 (95%)
 Frame = +3

Query: 585 IVMSQANVSRAKAVRALKNN 644
           +VM+QA VSR+KAV+ALK++
Sbjct: 185 LVMTQAGVSRSKAVKALKSH 204


>At1g33040.1 68414.m04068 nascent polypeptide-associated complex
           (NAC) domain-containing protein similar to alpha-NAC,
           non-muscle form [Mus musculus] GI:1666690; contains Pfam
           profile PF01849: NAC domain
          Length = 209

 Score =  104 bits (249), Expect = 6e-23
 Identities = 43/77 (55%), Positives = 65/77 (84%)
 Frame = +1

Query: 250 EEARKIMSKLGLKPVQGVERVTIRKSKNILFVINSPDVYKNPHSDTYIVFGEAKIEDLST 429
           +++RK + KLG+KPV  V RVTI+++KN+LFVI+ PDVYK+P+++TY++FGEAK++DLS+
Sbjct: 66  KKSRKAVLKLGMKPVSDVSRVTIKRAKNVLFVISKPDVYKSPNAETYVIFGEAKVDDLSS 125

Query: 430 QATMAAAERFKAPETTA 480
           Q    AA+RFK P+ T+
Sbjct: 126 QLQTQAAQRFKMPDVTS 142



 Score = 31.5 bits (68), Expect = 0.53
 Identities = 18/45 (40%), Positives = 23/45 (51%)
 Frame = +3

Query: 510 TVAPIAXXXXXXXXXXXXXXXXXXXIVMSQANVSRAKAVRALKNN 644
           T+AP+A                   +VM+QA VS+AKAV ALK N
Sbjct: 152 TMAPLAEEEDEDDVDDTGVEARDIDLVMTQAGVSKAKAVSALKAN 196


>At4g10480.1 68417.m01720 nascent polypeptide associated complex
           alpha chain protein, putative / alpha-NAC, putative
           similar to alpha-NAC, non-muscle form [Mus musculus]
           GI:1666690; contains Pfam profiles PF01849: NAC domain,
           PF00627: UBA/TS-N domain
          Length = 212

 Score =  103 bits (248), Expect = 8e-23
 Identities = 44/77 (57%), Positives = 64/77 (83%)
 Frame = +1

Query: 250 EEARKIMSKLGLKPVQGVERVTIRKSKNILFVINSPDVYKNPHSDTYIVFGEAKIEDLST 429
           +++RK M KLG+KPV  V RVTI++SKN+LFVI+ PDV+K+P+S+TY++FGEAKI+D+S+
Sbjct: 69  KKSRKAMLKLGMKPVTDVSRVTIKRSKNVLFVISKPDVFKSPNSETYVIFGEAKIDDMSS 128

Query: 430 QATMAAAERFKAPETTA 480
           Q    AA+RFK P+  +
Sbjct: 129 QLQAQAAQRFKMPDVAS 145



 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/21 (61%), Positives = 18/21 (85%)
 Frame = +3

Query: 585 IVMSQANVSRAKAVRALKNNH 647
           +VM+QA VSR KAV+ALK ++
Sbjct: 180 LVMTQAGVSRPKAVKALKESN 200


>At1g03730.1 68414.m00353 expressed protein similar to ESTs
           gb|AA605440 and gb|H37232
          Length = 167

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/27 (51%), Positives = 19/27 (70%)
 Frame = -3

Query: 512 RLPVVEASLPVAVVSGALNLSAAAMVA 432
           RLP V AS+ +  V GA+++ AAA VA
Sbjct: 70  RLPAVYASVVLGAVFGAMSMVAAAAVA 96


>At4g15840.1 68417.m02409 expressed protein
          Length = 660

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -3

Query: 644 VVLERSDCFRSRDVRLGHYYLHVLLIDSS 558
           ++L RS  FRS D +LGH  +   L D+S
Sbjct: 69  LILSRSSYFRSLDCKLGHLDIEADLRDAS 97


>At5g17630.1 68418.m02067 glucose-6-phosphate/phosphate
           translocator, putative similar to
           glucose-6-phosphate/phosphate-translocator precursor
           [Solanum tuberosum] gi|2997593|gb|AAC08526
          Length = 417

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -2

Query: 489 IASGCGLWCLESLSCSHGGLCG-QIFNLGFTKNNV 388
           I  GC L  +  +S + GGL G  I N+GF   N+
Sbjct: 236 IVMGCSLAAVTEVSFNLGGLSGAMISNVGFVLRNI 270


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,490,086
Number of Sequences: 28952
Number of extensions: 226882
Number of successful extensions: 614
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 613
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)