Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30369
         (582 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||...    31   0.16 
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|...    28   1.1  
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    27   1.5  
SPCC1682.03c |mug174||meiotically upregulated gene Mug174|Schizo...    27   1.5  
SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomy...    26   3.5  
SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces p...    26   3.5  
SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe...    25   6.1  

>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 992

 Score = 30.7 bits (66), Expect = 0.16
 Identities = 28/110 (25%), Positives = 47/110 (42%), Gaps = 2/110 (1%)
 Frame = +3

Query: 237  ARVNDLSTRSLMKRMKTKKSTWKTLA*KSTAAQDVSAKSTNTE--TPCVTASRTVPTRQT 410
            A+V+D+ST    +  + +K   + L  K  A+  VS  STN +  TP + +     +   
Sbjct: 680  AKVSDVSTSMAQEIQRMEKQN-ENLKSK-VASNPVSQTSTNAKASTPALASGSIWGSPSV 737

Query: 411  PDAWCAQTSTKPGNRIAKYTASDAYASTTLISAWSAIPPRSNRVLRNWPR 560
             +AW  + +      I K       A     S+ +   PRSN +  N P+
Sbjct: 738  INAWANKPAALKSPLIKKNIQQAELAQNKQQSSVTTASPRSNALNANTPK 787


>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 530

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
 Frame = +3

Query: 228 AEIARVNDLSTRSLMKRMKTKKSTWKTLA*KSTAAQ-DVSAKSTNTETPCVTASRTVPTR 404
           + +A  +++S  S    + T  S+   +A  S  A   VSA +    TP V+++    + 
Sbjct: 202 SSVASSSEISAGSATSYVPTSSSS---IALSSVVASASVSAANKGVSTPAVSSAAASSSA 258

Query: 405 QTPDAWCAQTSTKPGNRIAKYTASDAYASTT 497
                  + TS    + I+  T+S A AS T
Sbjct: 259 VVSSVVSSATSVAASSTISSATSSSASASPT 289


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1502

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +2

Query: 326  CSAGRVCEINEHGDAMCNCIKDC 394
            C+A R+C++ E       C+ DC
Sbjct: 974  CTASRICKVREIASLSLTCLLDC 996


>SPCC1682.03c |mug174||meiotically upregulated gene
           Mug174|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 626

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 19/74 (25%), Positives = 29/74 (39%), Gaps = 1/74 (1%)
 Frame = +3

Query: 279 MKTKKSTWKTLA*KSTAAQDVSAKSTNTETPCVTASRTVPTRQTPDAWCAQTSTKPGNRI 458
           +K     W +    S A+Q     S  T      A R  P  Q  D+W ++    P + I
Sbjct: 124 LKENIREWSSKFMNSKASQKQQMLSPETMQKVDLAGRASPRYQANDSWISKKRNAPLSSI 183

Query: 459 AKY-TASDAYASTT 497
           ++Y    + YA  T
Sbjct: 184 SQYANMPENYALNT 197


>SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 794

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -2

Query: 233 FCLMVSLLVQALRHSVLDVFSLRD 162
           FCL ++ ++  LR+SV  V +LRD
Sbjct: 449 FCLRINPMLDGLRNSVATVDALRD 472


>SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 599

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +1

Query: 505 VRGPQYHHVQIEYYGTGRENALTALK 582
           + GP+Y   +  YY  G E  LTA K
Sbjct: 561 IMGPEYDQTRDGYYPPGAEKRLTARK 586


>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -3

Query: 406 CLVGTVLDAVTHGVSVFVDFADT-SC 332
           CL+ + LD +T G+S F++  D  SC
Sbjct: 265 CLITSHLDTLTKGISQFIEKRDAHSC 290


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,182,408
Number of Sequences: 5004
Number of extensions: 39241
Number of successful extensions: 127
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)