Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30369
         (582 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              46   2e-07
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    26   0.31 
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    24   1.3  
DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    21   6.7  
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    21   6.7  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   6.7  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   8.9  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 46.4 bits (105), Expect = 2e-07
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
 Frame = +2

Query: 305 DPCLKVHCSAGRVCEINEHGD-AMCNCIKDCPYETDSRRMVCTNFNETWQSDCEVYRQRC 481
           DPC   +C  G+ CE++ +   A+C C++ CP      R VC +  + + + CE++R  C
Sbjct: 80  DPCASKYCGIGKECELSPNSTIAVCVCMRKCPRR---HRPVCASNGKIYANHCELHRAAC 136


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 25.8 bits (54), Expect = 0.31
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +2

Query: 338 RVCEINEHGDAMCNCIKDCPYETDSRRMVCTNFNET 445
           +VC    H D+ C C+       DS   V  NFNE+
Sbjct: 344 QVCRSRRHSDSCCLCL-------DSMNAVIRNFNES 372


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 10/33 (30%), Positives = 14/33 (42%)
 Frame = +2

Query: 329 SAGRVCEINEHGDAMCNCIKDCPYETDSRRMVC 427
           + G  C   EH       + DC  E  +RR +C
Sbjct: 296 TTGTKCVSGEHLSVSGGALNDCHAEVVARRCLC 328


>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
           protein.
          Length = 116

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +2

Query: 485 CLDNSDQCVVRNTTTFKSSITE 550
           C  ++  C+  ++  FKS ITE
Sbjct: 48  CFIDAGSCLTPDSVFFKSHITE 69


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
           protein.
          Length = 116

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +2

Query: 485 CLDNSDQCVVRNTTTFKSSITE 550
           C  ++  C+  ++  FKS ITE
Sbjct: 48  CFIDAGSCLTPDSVFFKSHITE 69


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -1

Query: 174 QPPRCPRGR 148
           QPP+CPR R
Sbjct: 564 QPPQCPRFR 572


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = +3

Query: 249 DLSTRSLMKRMKTKKSTWKTLA 314
           D+   S + + +TK+S W+  A
Sbjct: 384 DVENNSEVSKSRTKESAWRHFA 405


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,407
Number of Sequences: 438
Number of extensions: 2431
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16870914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)