Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30369
         (582 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g43310.1 68418.m05293 COP1-interacting protein-related contai...    27   6.9  
At2g36490.1 68415.m04479 HhH-GPD base excision DNA repair family...    27   6.9  
At4g36650.1 68417.m05201 transcription factor IIB (TFIIB) family...    27   9.1  

>At5g43310.1 68418.m05293 COP1-interacting protein-related contains
            similarity to COP1-Interacting Protein 7 (CIP7)
            [Arabidopsis thaliana] GI:3327868
          Length = 1237

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
 Frame = +3

Query: 210  EKRYHEA-EIARVNDLSTRSLMKRMKT-KKSTWKTLA*KSTAAQDVSAKSTNTETPCVTA 383
            EK+  EA E ++  + +++ L K +K  KKS   +++   T + + S  S     P VTA
Sbjct: 1133 EKKISEASEKSQTKESASKGLRKLLKFGKKSQSSSVSEHHTESNNASFNSNEDHEPAVTA 1192

Query: 384  SRT 392
            + T
Sbjct: 1193 ATT 1195


>At2g36490.1 68415.m04479 HhH-GPD base excision DNA repair family
           protein (ROS1) similar to DEMETER protein [Arabidopsis
           thaliana] GI:21743571; contains Pfam profile PF00730:
           HhH-GPD superfamily base excision DNA repair protein
          Length = 1393

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +3

Query: 420 WCAQTSTKPGNRIAKYTASDAYASTTL 500
           W  QT  KP + I  YT  D Y S+ L
Sbjct: 16  WIPQTPMKPFSPICPYTVEDQYHSSQL 42


>At4g36650.1 68417.m05201 transcription factor IIB (TFIIB) family
           protein contains Pfam domain, PF00382: Transcription
           factor TFIIB repeat
          Length = 503

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 19/71 (26%), Positives = 29/71 (40%)
 Frame = +3

Query: 204 LDEKRYHEAEIARVNDLSTRSLMKRMKTKKSTWKTLA*KSTAAQDVSAKSTNTETPCVTA 383
           L++KR  +AEI ++  L+  +L K  K     W  L   +        K+  T T   T 
Sbjct: 282 LEDKRKTQAEICKITGLTEVTLRKVYKELLENWDDLLPSNYTPAVPPEKAFPTTTISTTR 341

Query: 384 SRTVPTRQTPD 416
           S T      P+
Sbjct: 342 STTPRAVDPPE 352


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,912,820
Number of Sequences: 28952
Number of extensions: 221088
Number of successful extensions: 705
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 705
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1141585696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)