Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30368
         (669 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c...    26   4.3  
SPBC19C2.11c |||mitochondrial outer membrane protein |Schizosacc...    26   4.3  
SPAC1952.09c |||acetyl-CoA hydrolase|Schizosaccharomyces pombe|c...    26   5.6  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    25   7.5  
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex...    25   7.5  

>SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 571

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = +2

Query: 338 PLPESPLQRRRVCEINEHGDAMCNCIKDCPYET 436
           P   SP    + C  NE+G   C C    P+E+
Sbjct: 17  PRTSSPSSNFKTCVSNENGCINCRCSPSEPHES 49


>SPBC19C2.11c |||mitochondrial outer membrane protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 423 QSLMQLHMASPCSLISQTRLRCSGLS 346
           Q L  LH +   SL+ QT++R + LS
Sbjct: 69  QGLFNLHYSGDASLVLQTKIRANPLS 94


>SPAC1952.09c |||acetyl-CoA hydrolase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 521

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
 Frame = +1

Query: 487 LRSIPPASLCLDNSDQCRGPQYHHVQIEYYGTAEK-CL 597
           LR + P     +  D+C  P Y  +  EY+  AE  CL
Sbjct: 452 LRGLSPTERAREVIDKCAHPDYKPLLREYFDIAENYCL 489


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -1

Query: 573  ILDLNVVVLRTTALIRVVEA*ARWRYTSQSDCQVSLKF 460
            +L L +V+   T  I + E    W Y  +++  V LKF
Sbjct: 2339 LLRLEIVIKNATIFISIFEETGDWPYYIKNESGVLLKF 2376


>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
           subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 342

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = -2

Query: 302 IRDLVEKVVNSGYFCLWYRFSSKLSDIPCSMCSASEMSPRP 180
           +R ++EK   +  FC+   + +K+S    S C+     P P
Sbjct: 140 LRRVIEKYTKNVRFCIICNYINKISPAIQSRCTRFRFQPLP 180


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,536,232
Number of Sequences: 5004
Number of extensions: 47299
Number of successful extensions: 149
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)