Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30368
         (669 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0908 + 22507565-22507810,22507925-22508872,22509314-225103...    27   3.0  
03_02_0520 + 9092020-9092079,9092253-9093047                           29   4.4  
05_01_0553 + 4849535-4849553,4850727-4851913                           28   5.9  
06_01_0985 - 7646772-7647451,7647957-7648107                           28   7.7  
05_06_0246 + 26656629-26656907,26657001-26657228,26657595-266576...    28   7.7  
04_03_0094 - 11113279-11114469                                         28   7.7  
04_01_0423 - 5597068-5597109,5597181-5597309,5597490-5598431           28   7.7  
03_05_0862 + 28353235-28354431                                         28   7.7  

>07_03_0908 +
           22507565-22507810,22507925-22508872,22509314-22510337,
           22510425-22510477
          Length = 756

 Score = 26.6 bits (56), Expect(2) = 3.0
 Identities = 13/49 (26%), Positives = 21/49 (42%)
 Frame = -1

Query: 219 VLDVFSLRDVPAAELLRRWTFSSRGADPAVPTPHTLASAVQMTAITRAN 73
           VLD  +++D+P    L+RW   ++   P       L    Q+    R N
Sbjct: 611 VLDTRNIKDLPPQYFLKRWRKDAKSGSPNCSYSFPLDGDPQLVQTKRYN 659



 Score = 21.0 bits (42), Expect(2) = 3.0
 Identities = 9/26 (34%), Positives = 10/26 (38%)
 Frame = -1

Query: 405 HMASPCSLISQTRLRCSGLSGKGLPC 328
           H     SL S     C G    G+PC
Sbjct: 580 HFVKFDSLNSMVNCSCKGFEFVGIPC 605


>03_02_0520 + 9092020-9092079,9092253-9093047
          Length = 284

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = -1

Query: 219 VLDVFSLRDVPAAELLRRWTFSSR 148
           VLD+ +++ +PA  +L+RWT  +R
Sbjct: 138 VLDLMNIKSLPAQYILKRWTREAR 161


>05_01_0553 + 4849535-4849553,4850727-4851913
          Length = 401

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
 Frame = -3

Query: 652 KSQSRMRRGKSDISLSVQSGISRQFRNTRFERGGIADHGTDQSCRGISSLAVYFAIRLPG 473
           KS+S+      +++L V+    +  R + F +GG + H +++S  G  S  V +  + PG
Sbjct: 89  KSKSKAEIDDEEMALFVKK-FGKFMRRSGFFKGGSSKHYSNKSS-GRHSARVCYVCKEPG 146

Query: 472 -FVEVCAHHASG 440
            F+  C H   G
Sbjct: 147 HFIADCPHLKDG 158


>06_01_0985 - 7646772-7647451,7647957-7648107
          Length = 276

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -1

Query: 219 VLDVFSLRDVPAAELLRRWTFSSR 148
           VLDV +++ +P   +L+RWT  +R
Sbjct: 240 VLDVMNIKSLPKRYILKRWTREAR 263


>05_06_0246 +
           26656629-26656907,26657001-26657228,26657595-26657630,
           26658362-26658475,26658562-26659167
          Length = 420

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -2

Query: 242 SSKLSDIPCSMCSASEMSPRPSCSDVG 162
           S+  SD PC + SAS  S  P+ SD G
Sbjct: 310 SASSSDFPCDVSSASTSSATPARSDGG 336


>04_03_0094 - 11113279-11114469
          Length = 396

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 17/40 (42%), Positives = 21/40 (52%)
 Frame = -3

Query: 550 IADHGTDQSCRGISSLAVYFAIRLPGFVEVCAHHASGVCL 431
           IAD   +Q C  +  L V  + RL  F  +C HHAS V L
Sbjct: 211 IADLTLEQ-CPSVKRLVVA-SPRLDSFAMICCHHASHVVL 248


>04_01_0423 - 5597068-5597109,5597181-5597309,5597490-5598431
          Length = 370

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -1

Query: 219 VLDVFSLRDVPAAELLRRWTFSSR 148
           VLD+ ++  +PA  +L+RWT  +R
Sbjct: 196 VLDLMNIESLPAQYILKRWTREAR 219


>03_05_0862 + 28353235-28354431
          Length = 398

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 529 QSCRGISSLAVYFAIRLPGFVEVCAH 452
           + C G+    VYFA+ L G   VCA+
Sbjct: 335 RECPGLRPSTVYFAVDLAGETRVCAY 360


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,718,293
Number of Sequences: 37544
Number of extensions: 379345
Number of successful extensions: 1164
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1164
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)