Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30368
         (669 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.21 
SB_36847| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.64 
SB_51009| Best HMM Match : 7tm_1 (HMM E-Value=2.8e-14)                 31   1.1  
SB_19572| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_53017| Best HMM Match : Kazal_1 (HMM E-Value=0)                     30   2.0  
SB_6080| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.6  
SB_29786| Best HMM Match : I-set (HMM E-Value=0)                       29   3.4  
SB_17430| Best HMM Match : Kazal_1 (HMM E-Value=1e-07)                 29   3.4  
SB_13131| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_38061| Best HMM Match : DUF995 (HMM E-Value=4)                      29   4.5  
SB_43077| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_7030| Best HMM Match : Kazal_2 (HMM E-Value=4.6e-08)                28   6.0  
SB_1345| Best HMM Match : IBN_N (HMM E-Value=0.84)                     28   6.0  
SB_9563| Best HMM Match : Kazal_1 (HMM E-Value=1.7e-07)                28   7.9  
SB_54416| Best HMM Match : rve (HMM E-Value=1.4e-27)                   28   7.9  

>SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3261

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 17/54 (31%), Positives = 35/54 (64%)
 Frame = +2

Query: 374  CEINEHGDAMCNCIKDCPYETDSRRMVCTNFNETWQSDCEVYRQRAYASTTLIS 535
            CE+ ++ +A+C C KDCP E D+   VC    +T+ ++C + R++A  + ++++
Sbjct: 1779 CEVKDN-EAVCECPKDCPKE-DAE--VCGTNWKTYTNEC-MMRKQACMNNSMVT 1827



 Score = 31.1 bits (67), Expect = 0.85
 Identities = 17/55 (30%), Positives = 30/55 (54%)
 Frame = +2

Query: 374  CEINEHGDAMCNCIKDCPYETDSRRMVCTNFNETWQSDCEVYRQRAYASTTLISA 538
            C+  + G A C C +DCP    + + VC + N  + ++C + + RA A+   I+A
Sbjct: 1362 CQAKD-GKATCECSEDCP---KTLKPVCGSDNNDYDNEC-LMQARACATNKTITA 1411



 Score = 29.5 bits (63), Expect = 2.6
 Identities = 20/63 (31%), Positives = 28/63 (44%)
 Frame = +2

Query: 398  AMCNCIKDCPYETDSRRMVCTNFNETWQSDCEVYRQRAYASTTLISAVVRNTTTFKSSIT 577
            A C C K CP   D   +VC   N T+ ++C + RQ A     L S      T  +++ T
Sbjct: 1440 AECVCSKVCPRSLD---LVCGTDNITYNNECFLKRQAARPIARLRSD--ERATVTRANCT 1494

Query: 578  ELP 586
              P
Sbjct: 1495 NAP 1497


>SB_36847| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 344

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +2

Query: 392 GDAMCNCIKDCPYETDSRRMVCTNFNETWQSDCEVYR 502
           G A C C+ +CP   D  + VC +   T+ + CE++R
Sbjct: 75  GKASCECLSECP---DHIKPVCGSDGVTYPNHCELHR 108


>SB_51009| Best HMM Match : 7tm_1 (HMM E-Value=2.8e-14)
          Length = 579

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
 Frame = +2

Query: 338 PLPESPLQRRRVCEINEHGD---AMCNCIKDCPYETDSRRMVCTNFNETWQSDCEVYRQR 508
           P  ++   R  VC     GD     C C   CP   D    VC+ FN+ +++ CE+++  
Sbjct: 116 PCRDTFCPRGGVCTPYVEGDRSYTTCECPTSCPDLDDP---VCSIFNQEFKNACEMHK-- 170

Query: 509 AYASTTLISAVVRN 550
            YA    +S  ++N
Sbjct: 171 -YACKLQMSMAIKN 183


>SB_19572| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 823

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = -3

Query: 262 SASGIASRPSSQTFRARCVQPPRCPRGRAAPT 167
           S+SG+ SR  S T RAR   PP  P+  A+P+
Sbjct: 516 SSSGVPSRVGSATSRARQQPPPPPPQRPASPS 547


>SB_53017| Best HMM Match : Kazal_1 (HMM E-Value=0)
          Length = 1488

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +2

Query: 392 GDAMCNCIKDCPYETDSRRMVCTNFNETWQSDCEVYRQRAYASTTL 529
           G A+C C  +CP E      VC     T+ S C +  +   A T++
Sbjct: 797 GSAVCECNTECPSEASP---VCGQDGRTYSSTCAMDARACQAQTSI 839


>SB_6080| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2101

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = +2

Query: 374  CEINEHGDAMCNCIKDCPYETDSRRMVCTNFNETWQSDCEVYRQRAYASTTLIS 535
            C++ + G   C C   C YE      VC    +T+ + CE+ R  A   +T+++
Sbjct: 1283 CQVEDDGSTSCKCPIFCTYE---YMPVCGTDGKTYGNKCEM-RASACLKSTMVT 1332


>SB_29786| Best HMM Match : I-set (HMM E-Value=0)
          Length = 6300

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +2

Query: 377  EINEHGDAMCNCIKDCPYETDSRRMVCTNFNETWQSDCEVYRQ 505
            +I EHGD     +KDC  E ++ ++ C   N   Q+ C  + Q
Sbjct: 2540 DIKEHGDHHTLIVKDCRPE-ETGKLTCKARNSAGQAICSCFVQ 2581


>SB_17430| Best HMM Match : Kazal_1 (HMM E-Value=1e-07)
          Length = 396

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +2

Query: 374 CEINEHGDAMCNCIKDCPYETDSRRMVCTNFNETWQSDC 490
           C+     DA C C + CP   D R   C +   T+++DC
Sbjct: 9   CKAYGPKDARCECAESCPTYDDER---CGSDGVTYKNDC 44


>SB_13131| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 645

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +2

Query: 374 CEINEHGDAMCNCIKDCPYETDSRRMVCTNFNETWQSDC 490
           C+     DA C C + CP   D R   C +   T+++DC
Sbjct: 163 CKAYGPKDARCECAESCPTYDDER---CGSDGVTYKNDC 198


>SB_38061| Best HMM Match : DUF995 (HMM E-Value=4)
          Length = 220

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/52 (32%), Positives = 27/52 (51%)
 Frame = +1

Query: 169 SEQLGRGDISEAEHIEHGMSESLDEKRYQRQK*PELTTFSTRSLMKRMKTKK 324
           S   G  +++E EH E   SE  D+K  ++ K  +    + R L KR++ KK
Sbjct: 115 SSDSGNSEVTEQEHDEDANSEENDDKPTRKTKLDK----AQRKLNKRLRQKK 162


>SB_43077| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1149

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = +2

Query: 374 CEINEHGDAMCNCIKDCPYETDSRRMVCTNFNETWQSDCEV 496
           CE     DA C C + CP   D    VC    ET+ + C +
Sbjct: 314 CEAFAADDAQCVCPRKCPSYVD---QVCATNGETFDNLCRL 351


>SB_7030| Best HMM Match : Kazal_2 (HMM E-Value=4.6e-08)
          Length = 286

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = +2

Query: 374 CEINEHGDAMCNCIKDCPYETDSRRMVCTNFNETWQSDCEV 496
           CE     DA C C + CP   D    VC    ET+ + C +
Sbjct: 48  CEAFAADDAQCVCPRKCPSYVD---QVCATNGETFDNLCRL 85


>SB_1345| Best HMM Match : IBN_N (HMM E-Value=0.84)
          Length = 746

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
 Frame = +2

Query: 350 SPLQRRRVCEINEHGDAMCNCIKDCPY----ETDSRRMVCTNFNETWQSDCEVYRQR 508
           S + R    ++ EH     +C+  C +    E+D   +   N+    Q+DC V++QR
Sbjct: 58  SAMVRHIGLQLMEHSVKYASCVPFCTWMAELESDLMNVFRFNWGSMQQNDCAVFKQR 114


>SB_9563| Best HMM Match : Kazal_1 (HMM E-Value=1.7e-07)
          Length = 170

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/39 (35%), Positives = 17/39 (43%)
 Frame = +2

Query: 374 CEINEHGDAMCNCIKDCPYETDSRRMVCTNFNETWQSDC 490
           CE     DA C C + CP   D    VC    ET+ + C
Sbjct: 91  CEAFAADDAQCVCPRKCPSYVD---QVCATNGETFDNLC 126


>SB_54416| Best HMM Match : rve (HMM E-Value=1.4e-27)
          Length = 1068

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 24/111 (21%), Positives = 46/111 (41%), Gaps = 8/111 (7%)
 Frame = +3

Query: 360  SADVSAKSTNTETPCVT--ASRTVPTRQT----PDAWCAQTSTKPGNRIAKY-TASELMP 518
            S +++ +++++E  C T    +  P+R+       A   +T    G+R   +  A  L  
Sbjct: 918  SEEINRRNSDSEAFCRTDLQEKQEPSREAYVAVDSAMPDETKEMEGDRRPSFHRARSLSV 977

Query: 519  RQL*SVPWSA-IPPRSNRVLRNCREMPDCTESEMSDFPRRMRDWLFNIMRD 668
              L   P    +P +SN   ++      C E+E    P  +  W+F +  D
Sbjct: 978  SYLNETPSDMELPTQSNSASKSGESRASCMEAETMSLPAEINIWVFYVDTD 1028


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,850,766
Number of Sequences: 59808
Number of extensions: 418814
Number of successful extensions: 1432
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1276
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1432
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)