Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30368
         (669 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L21758-1|AAA16827.1|  264|Caenorhabditis elegans osteonectin pro...    46   3e-05
AF036692-3|AAB88325.1|  264|Caenorhabditis elegans Osteonectin (...    46   3e-05
U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical p...    40   0.002
AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synapt...    40   0.002
Z70309-3|CAA94357.2|  358|Caenorhabditis elegans Hypothetical pr...    29   2.3  
AF022983-3|AAB69942.2|  399|Caenorhabditis elegans Nuclear hormo...    29   2.3  
AC006608-11|AAF39761.1|  360|Caenorhabditis elegans Hypothetical...    28   5.2  
Z82266-12|CAB05185.2| 1080|Caenorhabditis elegans Hypothetical p...    28   6.9  
AF125443-1|AAD12801.1|  783|Caenorhabditis elegans Hypothetical ...    27   9.1  

>L21758-1|AAA16827.1|  264|Caenorhabditis elegans osteonectin
           protein.
          Length = 264

 Score = 45.6 bits (103), Expect = 3e-05
 Identities = 15/32 (46%), Positives = 23/32 (71%)
 Frame = +3

Query: 573 LRNCREMPDCTESEMSDFPRRMRDWLFNIMRD 668
           L  C+++ +CTE  M+ FP RM DWLF +M++
Sbjct: 132 LGECKKLDECTEEHMAQFPERMADWLFQVMKE 163



 Score = 45.2 bits (102), Expect = 4e-05
 Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = +2

Query: 374 CEINEHGDAMCNCIKDCP-YETDSRRMVCTNFNETWQSDCEVYRQR 508
           C + + G+  C CI  CP  + D    VC N N+T+ S C++YR+R
Sbjct: 64  CVVGKKGEPTCECISKCPELDGDPMDKVCANNNQTFTSLCDLYRER 109


>AF036692-3|AAB88325.1|  264|Caenorhabditis elegans Osteonectin
           (sparc) related protein1 protein.
          Length = 264

 Score = 45.6 bits (103), Expect = 3e-05
 Identities = 15/32 (46%), Positives = 23/32 (71%)
 Frame = +3

Query: 573 LRNCREMPDCTESEMSDFPRRMRDWLFNIMRD 668
           L  C+++ +CTE  M+ FP RM DWLF +M++
Sbjct: 132 LGECKKLDECTEEHMAQFPERMADWLFQVMKE 163



 Score = 45.2 bits (102), Expect = 4e-05
 Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = +2

Query: 374 CEINEHGDAMCNCIKDCP-YETDSRRMVCTNFNETWQSDCEVYRQR 508
           C + + G+  C CI  CP  + D    VC N N+T+ S C++YR+R
Sbjct: 64  CVVGKKGEPTCECISKCPELDGDPMDKVCANNNQTFTSLCDLYRER 109


>U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical
           protein F41G3.12 protein.
          Length = 1483

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +2

Query: 374 CEINEHGDAMCNCIKDCP-YETDSRRMVCTNFNETWQSDCEVYRQRAYASTTLISA 538
           C + E+  A C C  DCP YE +  + VC     T+ S+C + +   + S  +++A
Sbjct: 524 CVVGENEKAECKCPDDCPSYEMEEGKEVCGTDGVTYSSECHMKKSACHQSKFVMTA 579



 Score = 27.9 bits (59), Expect = 6.9
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = +2

Query: 374 CEINEHGDAMCNCIKDCPYETDSRRMVCTNFNETWQSDCEVYRQ 505
           C +     A C C   C    D  R VC    ET+ ++CE+ ++
Sbjct: 381 CVVKPDRTAECECPNRCE---DVMRPVCATNGETFDNECEMKKK 421


>AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synaptic
           protein) homologfamily member protein.
          Length = 1473

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +2

Query: 374 CEINEHGDAMCNCIKDCP-YETDSRRMVCTNFNETWQSDCEVYRQRAYASTTLISA 538
           C + E+  A C C  DCP YE +  + VC     T+ S+C + +   + S  +++A
Sbjct: 532 CVVGENEKAECKCPDDCPSYEMEEGKEVCGTDGVTYSSECHMKKSACHQSKFVMTA 587



 Score = 27.9 bits (59), Expect = 6.9
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = +2

Query: 374 CEINEHGDAMCNCIKDCPYETDSRRMVCTNFNETWQSDCEVYRQ 505
           C +     A C C   C    D  R VC    ET+ ++CE+ ++
Sbjct: 389 CVVKPDRTAECECPNRCE---DVMRPVCATNGETFDNECEMKKK 429


>Z70309-3|CAA94357.2|  358|Caenorhabditis elegans Hypothetical
           protein R102.3 protein.
          Length = 358

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 18/48 (37%), Positives = 27/48 (56%)
 Frame = -1

Query: 609 FQCSQAFLGSSVILDLNVVVLRTTALIRVVEA*ARWRYTSQSDCQVSL 466
           FQ  +A L  + ILD +  +L+T  +  + E   +WR TS S  +VSL
Sbjct: 87  FQRDEAMLLKNRILDASDEILKTNFMWNMFERSKKWRNTSHSS-EVSL 133


>AF022983-3|AAB69942.2|  399|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 270 protein.
          Length = 399

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 17/66 (25%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
 Frame = -1

Query: 189 PAAELLRRWTFSSRGAD--PAVPTPHTLASAVQMTAI-TRANARRPFILPFDDSFLCEAG 19
           P +++ RRW  +SRG    P+  + H+L  ++ M A+ + + ++ P ++       C   
Sbjct: 15  PLSKISRRWNLNSRGGAIVPSSTSVHSLGHSISMLAVMSPSTSKAPNLIAILTE-RCAVC 73

Query: 18  GNRVES 1
           G++V+S
Sbjct: 74  GDQVKS 79


>AC006608-11|AAF39761.1|  360|Caenorhabditis elegans Hypothetical
           protein C15F1.1 protein.
          Length = 360

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 15/46 (32%), Positives = 19/46 (41%)
 Frame = -1

Query: 198 RDVPAAELLRRWTFSSRGADPAVPTPHTLASAVQMTAITRANARRP 61
           RD+P  +L+R WT   R    A     TL   +Q     R N   P
Sbjct: 315 RDLPVHDLVREWTLLDRSTLQARLNMETLTHGMQEHTFIRYNKIEP 360


>Z82266-12|CAB05185.2| 1080|Caenorhabditis elegans Hypothetical
           protein F23B2.11 protein.
          Length = 1080

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 13/45 (28%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = +2

Query: 452 VCTNFNETWQSDCEVYRQR-AYASTTLISAVVRNTTTFKSSITEL 583
           +CT  +++  ++ EV RQ   Y STT+  +V    T++++ + +L
Sbjct: 297 MCTTIDKSTWTNMEVVRQAYVYLSTTITGSVQPMVTSYQTIVNDL 341


>AF125443-1|AAD12801.1|  783|Caenorhabditis elegans Hypothetical
           protein H32C10.3 protein.
          Length = 783

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 20/84 (23%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
 Frame = +2

Query: 356 LQRRRVCEINEHGDAMCNCIKDCPYETDSRRMVCTNFNETWQ--SDCEVYRQRAY---AS 520
           L+ R+   +N+HG  + + I   P+   +  + CT F++  +  S  E+ R++     +S
Sbjct: 668 LENRQKQTLNDHGLMVISLILAIPHVFGAGAITCTQFSQISRHVSTIEIIRKQRLQRNSS 727

Query: 521 TTLISAVVRNTTTFKSSITELPRN 592
              I++   N   +K S+    RN
Sbjct: 728 EKTITSPEHNPWEYKQSVKTRIRN 751


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,810,117
Number of Sequences: 27780
Number of extensions: 294294
Number of successful extensions: 1043
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 977
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1041
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)