Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30368
         (669 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              32   0.004
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    26   0.37 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   2.0  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             23   2.0  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    22   4.6  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   4.6  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   6.1  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 32.3 bits (70), Expect = 0.004
 Identities = 14/53 (26%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
 Frame = +2

Query: 374 CEINEHGD-AMCNCIKDCPYETDSRRMVCTNFNETWQSDCEVYRQRAYASTTL 529
           CE++ +   A+C C++ CP      R VC +  + + + CE++R   ++ ++L
Sbjct: 93  CELSPNSTIAVCVCMRKCPRR---HRPVCASNGKIYANHCELHRAACHSGSSL 142


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 25.8 bits (54), Expect = 0.37
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +2

Query: 368 RVCEINEHGDAMCNCIKDCPYETDSRRMVCTNFNET 475
           +VC    H D+ C C+       DS   V  NFNE+
Sbjct: 344 QVCRSRRHSDSCCLCL-------DSMNAVIRNFNES 372


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +3

Query: 345 LKVHCSADVSAKSTNTETPCVTASRTVPTR 434
           L V+  AD++ K+  T    V+ +  VPT+
Sbjct: 82  LAVNAEADITLKNAGTPPEAVSYNVAVPTK 111


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +3

Query: 345 LKVHCSADVSAKSTNTETPCVTASRTVPTR 434
           L V+  AD++ K+  T    V+ +  VPT+
Sbjct: 82  LAVNAEADITLKNAGTPPEAVSYNVAVPTK 111


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/28 (32%), Positives = 12/28 (42%)
 Frame = +2

Query: 374 CEINEHGDAMCNCIKDCPYETDSRRMVC 457
           C   EH       + DC  E  +RR +C
Sbjct: 301 CVSGEHLSVSGGALNDCHAEVVARRCLC 328


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 3/29 (10%)
 Frame = -3

Query: 256 SGIASRPSSQTFRA---RCVQPPRCPRGR 179
           SG  S    +  RA   +  QPP+CPR R
Sbjct: 544 SGSTSSGDDELHRASLSKTPQPPQCPRFR 572


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +1

Query: 349  KSTAAQTCLRNQRTRRRHV 405
            KS     C+R +RT++R+V
Sbjct: 1643 KSLQDHDCIRQERTQQRNV 1661


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,388
Number of Sequences: 438
Number of extensions: 3398
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)