Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30368
         (669 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g75150.1 68414.m08729 expressed protein ; expression supporte...    33   0.23 
At5g02880.1 68418.m00231 HECT-domain-containing protein / ubiqui...    29   3.7  
At1g49900.1 68414.m05596 zinc finger (C2H2 type) family protein ...    28   4.9  
At2g45290.1 68415.m05637 transketolase, putative strong similari...    27   8.5  

>At1g75150.1 68414.m08729 expressed protein ; expression supported
           by MPSS
          Length = 753

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = +3

Query: 354 HCSADVSAKSTNTETPCVTASRTVPTRQTPDAWCAQTSTKPGNRIAKYTASEL 512
           HCS D +  S N+++P    + + PT Q P   C QT       + K ++  L
Sbjct: 308 HCSEDSAGPSENSDSPSKREAESNPTHQDPSV-CPQTINSGDELLEKMSSRSL 359


>At5g02880.1 68418.m00231 HECT-domain-containing protein /
           ubiquitin-transferase family protein /
           armadillo/beta-catenin-like repeat-containing protein
           similar to SP|Q14669 Thyroid receptor interacting
           protein 12 (TRIP12) {Homo sapiens}; contains Pfam
           profiles PF00632: HECT-domain (ubiquitin-transferase),
           PF00514: Armadillo/beta-catenin-like repeat
          Length = 1502

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +1

Query: 565 IEYYGTAEKCLTALKARCLTSPVAC 639
           IEY   AE+CL AL+      PVAC
Sbjct: 208 IEYLDVAEQCLQALEKISRDEPVAC 232


>At1g49900.1 68414.m05596 zinc finger (C2H2 type) family protein
           contains Pfam profile: PF00096 zinc finger, C2H2 type
          Length = 917

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = -1

Query: 129 PTPHTLASAVQMTAITRANARRPFILPFDDSFLCEAGGNRVES 1
           PTPH+       T + +    +  +LP  DS+ C   G  + S
Sbjct: 719 PTPHSQTQPQSQTQLQKVTQPQTQMLPKSDSYQCNVCGRELPS 761


>At2g45290.1 68415.m05637 transketolase, putative strong similarity
           to transketolase 1 [Capsicum annuum] GI:3559814;
           contains Pfam profiles PF02779: Transketolase, pyridine
           binding domain, PF02780: Transketolase, C-terminal
           domain, PF00456: Transketolase, thiamine diphosphate
           binding domain
          Length = 741

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = -3

Query: 577 RNTRFERGGIADHGTDQSCRGISSLAVYFAIRLPGFVEVCA 455
           RN RF   G+ +HG    C GI       A+  PGF+  CA
Sbjct: 480 RNLRF---GVREHGMGAICNGI-------ALHSPGFIPYCA 510


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,022,191
Number of Sequences: 28952
Number of extensions: 268933
Number of successful extensions: 793
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 792
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)