Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30367
(618 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 123 2e-29
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 62 8e-11
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 62 8e-11
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 42 9e-05
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual 28 0.94
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos... 28 0.94
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 26 5.0
SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom... 26 5.0
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb... 26 5.0
SPCC622.05 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 25 6.6
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 123 bits (297), Expect = 2e-29
Identities = 54/61 (88%), Positives = 60/61 (98%)
Frame = +1
Query: 1 ATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 180
ATFIGNST+IQE+F+R+ +QF+AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ
Sbjct: 365 ATFIGNSTSIQEIFRRLGDQFSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 424
Query: 181 Y 183
Y
Sbjct: 425 Y 425
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 61.7 bits (143), Expect = 8e-11
Identities = 23/57 (40%), Positives = 40/57 (70%)
Frame = +1
Query: 10 IGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 180
+ N+T+I E + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 382 LSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEE 438
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 61.7 bits (143), Expect = 8e-11
Identities = 23/57 (40%), Positives = 40/57 (70%)
Frame = +1
Query: 10 IGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 180
+ N+T+I E + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 378 LSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEE 434
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 41.5 bits (93), Expect = 9e-05
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
Frame = +1
Query: 10 IGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMN---DLVSEYQ 177
+ N T+I LFKR +Q+ + +R AFL Y E + E + E +S+ + DL++EY+
Sbjct: 378 LANHTSIASLFKRTLDQYDRLRKRNAFLEQYKKEAIFEDDLNEFDSSRDVVADLINEYE 436
>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1202
Score = 28.3 bits (60), Expect = 0.94
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +3
Query: 393 KLPVMTNYLNEHNLFNTFLDIPPGLVE 473
K+ ++L EHN+FNTFL G+V+
Sbjct: 577 KITDCLSFLLEHNIFNTFLVYNEGIVK 603
>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 28.3 bits (60), Expect = 0.94
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +1
Query: 16 NSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDE 123
NS+ IQ L K I+ T +R ++ Y+G G+DE
Sbjct: 193 NSSEIQALEKSINTFTTYQYRAPEMINLYSGLGIDE 228
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 25.8 bits (54), Expect = 5.0
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -1
Query: 570 VSNFDPPFCFCCTYYVNKK 514
VSN PPF C TY ++K+
Sbjct: 3032 VSNIGPPFPNCSTYILSKE 3050
>SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 558
Score = 25.8 bits (54), Expect = 5.0
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = -3
Query: 355 ILTLYRNHYGYSNKM*LCINGXHYVVEREISPLRFNALQSPAP 227
I+ Y +H G N + NG +V + S +RF +P P
Sbjct: 388 IVQAYDHHLGGINSITFLENGKRFVTTSDDSSMRFWEYGTPVP 430
>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2386
Score = 25.8 bits (54), Expect = 5.0
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +1
Query: 433 CSIHSLIFHQASLRARSEICKG*SKKTLF 519
C S Q +LRA EIC G + TLF
Sbjct: 380 CRYQSSEIDQTTLRAFGEICTGKLENTLF 408
>SPCC622.05 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 115
Score = 25.4 bits (53), Expect = 6.6
Identities = 13/50 (26%), Positives = 24/50 (48%)
Frame = -3
Query: 367 KACLILTLYRNHYGYSNKM*LCINGXHYVVEREISPLRFNALQSPAPALR 218
K L+ + + Y+ + + HY E + P F++ +SP+P LR
Sbjct: 5 KMMLLRLIKSKEHCYTMVISFAVLSIHYACECFLYPKLFDSQRSPSPFLR 54
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,180,794
Number of Sequences: 5004
Number of extensions: 38392
Number of successful extensions: 97
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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