Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30367
(618 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_47198| Best HMM Match : Tubulin (HMM E-Value=0) 132 3e-31
SB_39308| Best HMM Match : Tubulin (HMM E-Value=0) 132 3e-31
SB_17879| Best HMM Match : Tubulin (HMM E-Value=0) 132 3e-31
SB_44780| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-34) 124 4e-29
SB_17651| Best HMM Match : Tubulin_C (HMM E-Value=4.7e-28) 124 4e-29
SB_25311| Best HMM Match : Tubulin (HMM E-Value=0) 83 5e-20
SB_17880| Best HMM Match : Tubulin_C (HMM E-Value=0) 81 5e-16
SB_48961| Best HMM Match : Tubulin (HMM E-Value=0) 63 2e-10
SB_42897| Best HMM Match : No HMM Matches (HMM E-Value=.) 63 2e-10
SB_37573| Best HMM Match : No HMM Matches (HMM E-Value=.) 63 2e-10
SB_22193| Best HMM Match : No HMM Matches (HMM E-Value=.) 63 2e-10
SB_22192| Best HMM Match : No HMM Matches (HMM E-Value=.) 63 2e-10
SB_22191| Best HMM Match : No HMM Matches (HMM E-Value=.) 63 2e-10
SB_22190| Best HMM Match : No HMM Matches (HMM E-Value=.) 63 2e-10
SB_19437| Best HMM Match : Tubulin (HMM E-Value=0) 63 2e-10
SB_2674| Best HMM Match : Tubulin (HMM E-Value=0) 63 2e-10
SB_51156| Best HMM Match : Tubulin_C (HMM E-Value=0) 63 2e-10
SB_23895| Best HMM Match : Tubulin_C (HMM E-Value=0) 63 2e-10
SB_2003| Best HMM Match : Tubulin (HMM E-Value=0) 63 2e-10
SB_51150| Best HMM Match : Tubulin_C (HMM E-Value=0) 62 3e-10
SB_47795| Best HMM Match : Tubulin_C (HMM E-Value=0.24) 62 3e-10
SB_5512| Best HMM Match : Tubulin (HMM E-Value=0) 56 3e-08
SB_57880| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 2e-05
SB_40336| Best HMM Match : Tubulin_C (HMM E-Value=1.3e-32) 38 0.005
>SB_47198| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 446
Score = 132 bits (318), Expect = 3e-31
Identities = 61/61 (100%), Positives = 61/61 (100%)
Frame = +1
Query: 1 ATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 180
ATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ
Sbjct: 365 ATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 424
Query: 181 Y 183
Y
Sbjct: 425 Y 425
>SB_39308| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 391
Score = 132 bits (318), Expect = 3e-31
Identities = 61/61 (100%), Positives = 61/61 (100%)
Frame = +1
Query: 1 ATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 180
ATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ
Sbjct: 310 ATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 369
Query: 181 Y 183
Y
Sbjct: 370 Y 370
>SB_17879| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 446
Score = 132 bits (318), Expect = 3e-31
Identities = 61/61 (100%), Positives = 61/61 (100%)
Frame = +1
Query: 1 ATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 180
ATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ
Sbjct: 365 ATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 424
Query: 181 Y 183
Y
Sbjct: 425 Y 425
>SB_44780| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-34)
Length = 747
Score = 124 bits (300), Expect = 4e-29
Identities = 54/61 (88%), Positives = 60/61 (98%)
Frame = +1
Query: 1 ATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 180
ATF+GN+TAIQELFKR+ EQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM+DL++EYQQ
Sbjct: 130 ATFVGNNTAIQELFKRVGEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMHDLIAEYQQ 189
Query: 181 Y 183
Y
Sbjct: 190 Y 190
>SB_17651| Best HMM Match : Tubulin_C (HMM E-Value=4.7e-28)
Length = 271
Score = 124 bits (300), Expect = 4e-29
Identities = 54/61 (88%), Positives = 60/61 (98%)
Frame = +1
Query: 1 ATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 180
ATF+GN+TAIQELFKR+ EQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM+DL++EYQQ
Sbjct: 192 ATFVGNNTAIQELFKRVGEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMHDLIAEYQQ 251
Query: 181 Y 183
Y
Sbjct: 252 Y 252
>SB_25311| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 629
Score = 82.6 bits (195), Expect(2) = 5e-20
Identities = 36/50 (72%), Positives = 42/50 (84%)
Frame = +1
Query: 1 ATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESN 150
ATF+ NSTAIQE F+R +EQF AMFRR+AFLHWYT EGMD +EFTE + N
Sbjct: 184 ATFLYNSTAIQEAFRRFTEQFAAMFRRRAFLHWYTTEGMDPLEFTEIKRN 233
Score = 32.7 bits (71), Expect(2) = 5e-20
Identities = 12/18 (66%), Positives = 16/18 (88%)
Frame = +1
Query: 130 FTEAESNMNDLVSEYQQY 183
+ A+SN+NDL+SEYQQY
Sbjct: 256 YFSADSNLNDLISEYQQY 273
>SB_17880| Best HMM Match : Tubulin_C (HMM E-Value=0)
Length = 375
Score = 81.4 bits (192), Expect = 5e-16
Identities = 36/60 (60%), Positives = 47/60 (78%)
Frame = +1
Query: 1 ATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 180
A+ I ++TAIQELFKRI + MFRR+AFLHWYT EGMD +F EA++++ DL+S YQQ
Sbjct: 270 ASCISSNTAIQELFKRIRLHYKLMFRRRAFLHWYTEEGMDSQQFEEADNDILDLISTYQQ 329
>SB_48961| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 536
Score = 62.9 bits (146), Expect = 2e-10
Identities = 24/57 (42%), Positives = 40/57 (70%)
Frame = +1
Query: 10 IGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 180
+ N+TAI E + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 362 LSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 418
>SB_42897| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 602
Score = 62.9 bits (146), Expect = 2e-10
Identities = 24/57 (42%), Positives = 40/57 (70%)
Frame = +1
Query: 10 IGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 180
+ N+TAI E + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 530 LSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 586
>SB_37573| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 62.9 bits (146), Expect = 2e-10
Identities = 24/57 (42%), Positives = 40/57 (70%)
Frame = +1
Query: 10 IGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 180
+ N+TAI E + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 315 LSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 371
>SB_22193| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1231
Score = 62.9 bits (146), Expect = 2e-10
Identities = 24/57 (42%), Positives = 40/57 (70%)
Frame = +1
Query: 10 IGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 180
+ N+TAI E + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 749 LSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 805
Score = 62.9 bits (146), Expect = 2e-10
Identities = 24/57 (42%), Positives = 40/57 (70%)
Frame = +1
Query: 10 IGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 180
+ N+TAI E + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 1158 LSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 1214
>SB_22192| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 452
Score = 62.9 bits (146), Expect = 2e-10
Identities = 24/57 (42%), Positives = 40/57 (70%)
Frame = +1
Query: 10 IGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 180
+ N+TAI E + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 378 LSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434
>SB_22191| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 865
Score = 62.9 bits (146), Expect = 2e-10
Identities = 24/57 (42%), Positives = 40/57 (70%)
Frame = +1
Query: 10 IGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 180
+ N+TAI E + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 363 LSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 419
Score = 62.9 bits (146), Expect = 2e-10
Identities = 24/57 (42%), Positives = 40/57 (70%)
Frame = +1
Query: 10 IGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 180
+ N+TAI E + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 794 LSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 850
>SB_22190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 417
Score = 62.9 bits (146), Expect = 2e-10
Identities = 24/57 (42%), Positives = 40/57 (70%)
Frame = +1
Query: 10 IGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 180
+ N+TAI E + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 343 LSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 399
>SB_19437| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 885
Score = 62.9 bits (146), Expect = 2e-10
Identities = 24/57 (42%), Positives = 40/57 (70%)
Frame = +1
Query: 10 IGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 180
+ N+TAI E + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 811 LSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 867
Score = 62.5 bits (145), Expect = 3e-10
Identities = 23/57 (40%), Positives = 40/57 (70%)
Frame = +1
Query: 10 IGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 180
+ N+TA+ E + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 378 LSNTTAVAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434
>SB_2674| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 1036
Score = 62.9 bits (146), Expect = 2e-10
Identities = 24/57 (42%), Positives = 40/57 (70%)
Frame = +1
Query: 10 IGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 180
+ N+TAI E + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 963 LSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 1019
>SB_51156| Best HMM Match : Tubulin_C (HMM E-Value=0)
Length = 377
Score = 62.9 bits (146), Expect = 2e-10
Identities = 24/57 (42%), Positives = 40/57 (70%)
Frame = +1
Query: 10 IGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 180
+ N+TAI E + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 303 LSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 359
>SB_23895| Best HMM Match : Tubulin_C (HMM E-Value=0)
Length = 250
Score = 62.9 bits (146), Expect = 2e-10
Identities = 24/57 (42%), Positives = 40/57 (70%)
Frame = +1
Query: 10 IGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 180
+ N+TAI E + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 176 LSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 232
>SB_2003| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 451
Score = 62.9 bits (146), Expect = 2e-10
Identities = 24/57 (42%), Positives = 40/57 (70%)
Frame = +1
Query: 10 IGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 180
+ N+TAI E + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 378 LSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434
>SB_51150| Best HMM Match : Tubulin_C (HMM E-Value=0)
Length = 232
Score = 62.1 bits (144), Expect = 3e-10
Identities = 23/57 (40%), Positives = 41/57 (71%)
Frame = +1
Query: 10 IGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 180
+ N+TAI + + R++ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 176 LSNTTAIADAWARLNHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 232
>SB_47795| Best HMM Match : Tubulin_C (HMM E-Value=0.24)
Length = 149
Score = 62.1 bits (144), Expect = 3e-10
Identities = 23/57 (40%), Positives = 41/57 (71%)
Frame = +1
Query: 10 IGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 180
+ N+TAI + + R++ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 76 LSNTTAIADAWARLNHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 132
>SB_5512| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 365
Score = 55.6 bits (128), Expect = 3e-08
Identities = 21/51 (41%), Positives = 35/51 (68%)
Frame = +1
Query: 28 IQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 180
I E + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 297 IAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 347
>SB_57880| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 65
Score = 46.0 bits (104), Expect = 2e-05
Identities = 16/36 (44%), Positives = 27/36 (75%)
Frame = +1
Query: 73 FRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 180
+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 13 YAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 48
>SB_40336| Best HMM Match : Tubulin_C (HMM E-Value=1.3e-32)
Length = 488
Score = 38.3 bits (85), Expect = 0.005
Identities = 15/56 (26%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Frame = +1
Query: 10 IGNSTAIQELFKRISEQFTAMFRRKAFLHWYTG-EGMDEMEFTEAESNMNDLVSEY 174
+ N++ I+ F + ++F +++RKA +H YT +G++ +F + +++ L+ EY
Sbjct: 415 LANNSCIKNTFVELKDRFMKLYKRKAHVHHYTHVDGLEVGQFDDGLESLSWLIQEY 470
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,477,712
Number of Sequences: 59808
Number of extensions: 286210
Number of successful extensions: 686
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 686
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -