Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30364
         (553 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.01 |||ER membrane protein, ICE2 family|Schizosaccharom...    26   3.2  
SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces pombe...    26   3.2  
SPAC750.08c |||NAD-dependent malic enzyme|Schizosaccharomyces po...    25   7.4  

>SPAC23C11.01 |||ER membrane protein, ICE2
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = -3

Query: 362 SAVYSTLRTEPSASTRVYSPCTASPSRDSCWDLLSPCV 249
           S +Y+  R  P+    +     +  S+   W +LSPC+
Sbjct: 336 SVMYAVTRILPAIQNNIIFLEYSRTSKQGMWSILSPCI 373


>SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 520

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +1

Query: 265 KSQHESRDGDAVHGEYTLVEADGS 336
           K+  +S  GD++HG Y+++E  G+
Sbjct: 395 KAIRDSMVGDSIHGLYSILETSGA 418


>SPAC750.08c |||NAD-dependent malic enzyme|Schizosaccharomyces
           pombe|chr 1||Partial|Manual
          Length = 228

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +1

Query: 7   PRSLLVCWRRVLPDHPASRPASRH 78
           PRSL V    +LPD   +R  SRH
Sbjct: 162 PRSLFVADEALLPDLDNAREISRH 185


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,434,947
Number of Sequences: 5004
Number of extensions: 18583
Number of successful extensions: 65
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)