Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30364
         (553 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0849 + 21997758-21998423                                         31   0.81 
01_01_0345 + 2752790-2753102,2753309-2754079,2755795-2756078           31   0.81 
02_02_0426 - 10087547-10089054,10090744-10090762                       29   2.5  
01_01_0469 - 3456067-3456123,3456414-3456565,3456649-3456779,345...    28   4.3  
08_01_1058 + 10765837-10766325                                         27   10.0 
04_01_0084 - 912255-912368,912738-912822,914050-917105,920290-92...    27   10.0 

>07_03_0849 + 21997758-21998423
          Length = 221

 Score = 30.7 bits (66), Expect = 0.81
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
 Frame = -3

Query: 374 PWWSSAVYS---TLRTEPSASTRVYSPCTASPSRDSCWDLLS-PCVRQQQSRRSR 222
           PW S++  S      +  S+ST   +PC+ S S  S  D LS P  R+   RR R
Sbjct: 79  PWSSTSALSLDSARSSSSSSSTTTTAPCSRSRSLSSLSDALSPPAARRAPERRGR 133


>01_01_0345 + 2752790-2753102,2753309-2754079,2755795-2756078
          Length = 455

 Score = 30.7 bits (66), Expect = 0.81
 Identities = 14/34 (41%), Positives = 24/34 (70%)
 Frame = -3

Query: 365 SSAVYSTLRTEPSASTRVYSPCTASPSRDSCWDL 264
           +S+V    R++PS+ + + SPC ASP RD+ ++L
Sbjct: 389 ASSVGPLFRSQPSSDS-LQSPCKASPCRDASFEL 421


>02_02_0426 - 10087547-10089054,10090744-10090762
          Length = 508

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 11/35 (31%), Positives = 14/35 (40%)
 Frame = -3

Query: 377 KPWWSSAVYSTLRTEPSASTRVYSPCTASPSRDSC 273
           +PWW     + +   P A      PC  SPS   C
Sbjct: 437 RPWWEKEAATAVPDPPCARVATPEPCFHSPSYYEC 471


>01_01_0469 -
           3456067-3456123,3456414-3456565,3456649-3456779,
           3456846-3458036,3458460-3458541,3458947-3458984,
           3459091-3459250,3459356-3459557,3460245-3460329,
           3460809-3460863,3461230-3461325,3461807-3461940,
           3462031-3462043,3462315-3462419,3462935-3463121
          Length = 895

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -3

Query: 311 YSPCTASPSRDSCWDLLSPCVRQQQSRRSRIWDERIPLHG 192
           +S C   P +DS     SP +  Q SR +  W++ +  +G
Sbjct: 638 HSSCAQQPGKDSLLQGFSPGIDFQDSRLNSFWEDGLADNG 677


>08_01_1058 + 10765837-10766325
          Length = 162

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 7/56 (12%)
 Frame = -3

Query: 377 KPWWSSAVYSTLRTEPSASTRVYSPCTASPSRDSC--WDLLS-----PCVRQQQSR 231
           +P  S+ +   L   PS+S++ +  CTAS  R S   W  L+     PCVR    R
Sbjct: 52  RPPGSAVIIVVLTALPSSSSQHHRRCTASVGRPSAPSWPSLNVASSPPCVRTDLPR 107


>04_01_0084 -
           912255-912368,912738-912822,914050-917105,920290-920508
          Length = 1157

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 359 AVYSTLRTEPSASTRVYSPCTAS 291
           +V S + TEPS ST +  PC  S
Sbjct: 19  SVSSDVHTEPSTSTSIQQPCLGS 41


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,205,627
Number of Sequences: 37544
Number of extensions: 152524
Number of successful extensions: 693
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)