Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30364
         (553 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44749| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.9  
SB_27174| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_18848| Best HMM Match : WD40 (HMM E-Value=5.5e-07)                  28   5.8  
SB_11402| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.7  

>SB_44749| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2250

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = +1

Query: 256  GDNKSQHESRDGDAV--HGEYTLVEADGSVRKVEYTAD 363
            GD+  +H+  DGD+V  H +Y     D  VR  +Y  D
Sbjct: 1874 GDSDVRHDDYDGDSVVRHDDYNDDNGDSDVRHDDYDGD 1911


>SB_27174| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 318

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
 Frame = -3

Query: 383 ALKPWWSSAVYSTLR--TEPSASTRVYSPCTASPSRD-SC 273
           A  PWW+S  Y  L+   EP      Y+  +   SRD SC
Sbjct: 275 ATDPWWTSKAYPILKRVMEPGQPVLYYTAHSKQASRDRSC 314


>SB_18848| Best HMM Match : WD40 (HMM E-Value=5.5e-07)
          Length = 508

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = -3

Query: 362 SAVYSTLRTEPSASTRVYSPCTASPSRDSCWDLLSPCVRQQQSRRSRIW 216
           SA    L T+PS    V      S  R S WD+ S C+ + +S  +++W
Sbjct: 62  SASVLALATDPSNDILVSGD---SAGRISVWDITSYCISRAESIIAQVW 107


>SB_11402| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 753

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -3

Query: 308 SPCTASPSRDSCWDLLSP 255
           S C+A+PS  S WD+L P
Sbjct: 241 SACSATPSTTSSWDMLLP 258


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,092,958
Number of Sequences: 59808
Number of extensions: 154566
Number of successful extensions: 620
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1276425465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)