Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30364
         (553 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g67120.1 68414.m07636 midasin-related similar to Midasin (MID...    28   3.6  
At4g17570.1 68417.m02627 zinc finger (GATA type) family protein        27   6.3  

>At1g67120.1 68414.m07636 midasin-related similar to Midasin
           (MIDAS-containing protein) (Swiss-Prot:Q12019)
           [Saccharomyces cerevisiae]; similar to Midasin
           (MIDAS-containing protein) (Swiss-Prot:Q9NU22) [Homo
           sapiens]; contains Prosite PS00017: ATP/GTP-binding site
           motif A (P-loop)
          Length = 5336

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 17/37 (45%), Positives = 21/37 (56%)
 Frame = -3

Query: 356 VYSTLRTEPSASTRVYSPCTASPSRDSCWDLLSPCVR 246
           + S LR + S+ST   S   +SPSR S  DLL  C R
Sbjct: 530 INSALRPQFSSSTTENSATFSSPSRFSLRDLLKWCER 566


>At4g17570.1 68417.m02627 zinc finger (GATA type) family protein
          Length = 510

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -3

Query: 329 SASTRVYSPCTASPSRDSCWDLLSPCVRQ 243
           S S   +S    SPS+ + WD   PC R+
Sbjct: 125 SESCAQFSSADGSPSQSNAWDTTVPCKRR 153


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,707,486
Number of Sequences: 28952
Number of extensions: 105981
Number of successful extensions: 401
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 400
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1043173136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)