Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30363
(514 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_04_0129 + 17520753-17520842,17521651-17521741,17521887-175220... 106 9e-24
02_01_0385 + 2783387-2783695,2784149-2785082,2785206-2785309,278... 28 3.8
12_01_0457 + 3601652-3601903,3603399-3603779 28 5.1
07_03_0493 + 18747427-18748356,18748594-18748697,18749586-187497... 27 6.7
03_02_0901 + 12267042-12267182,12267949-12268095,12268163-122682... 27 6.7
05_01_0089 + 589457-589506,589598-589741,589820-589903,590118-59... 27 8.8
01_06_1208 + 35424241-35424370,35424415-35424728,35424782-354249... 27 8.8
>03_04_0129 +
17520753-17520842,17521651-17521741,17521887-17522070,
17522149-17522224
Length = 146
Score = 106 bits (255), Expect = 9e-24
Identities = 46/79 (58%), Positives = 61/79 (77%)
Frame = +3
Query: 18 TVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRHI 197
TVKDV + VK +AHLK++GK+++PE +D+VKTARFKEL PYDPDW+Y R A+I R I
Sbjct: 8 TVKDVNPHEFVKAYSAHLKRSGKMELPEWVDIVKTARFKELPPYDPDWYYTRAASIARKI 67
Query: 198 YIRSPVGVKTVTKIFGGRK 254
Y+R +GV KI+GGR+
Sbjct: 68 YLRQGIGVGGFQKIYGGRQ 86
Score = 64.5 bits (150), Expect = 5e-11
Identities = 26/52 (50%), Positives = 39/52 (75%)
Frame = +2
Query: 251 QSNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRILTTQGRRDLDRI 406
Q NG P HFC+SSG+I+R LQ L+ + +++ GGR++T+QGRRDLD++
Sbjct: 86 QRNGSRPPHFCKSSGAISRNILQQLQKMGIIDVDPKGGRLITSQGRRDLDQV 137
>02_01_0385 +
2783387-2783695,2784149-2785082,2785206-2785309,
2785402-2785486,2785517-2787578,2787732-2787753,
2788157-2788327,2791473-2791517,2792558-2793874,
2793962-2794012,2794090-2794188,2794352-2794504,
2794554-2794571
Length = 1789
Score = 28.3 bits (60), Expect = 3.8
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = -3
Query: 125 SCLYKIHVLRYLDFARFF*VS-SDSFNNLVLFNILYCDGTHL 3
S +YK+ +LRYLD + S S SFN+L+ L T+L
Sbjct: 550 SSVYKLKLLRYLDASSLRISSFSKSFNHLLNLQALILSNTYL 591
>12_01_0457 + 3601652-3601903,3603399-3603779
Length = 210
Score = 27.9 bits (59), Expect = 5.1
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Frame = +3
Query: 198 YIRSPVGVKTVTKIFGGRKVMELHLHISAG-----HQAVLHARLCNRW 326
Y+ S ++ ++FGG L LH+ G HQ V+ + +RW
Sbjct: 100 YVPSGTTGVSIMQVFGGGTATTLMLHVYGGDLWYYHQQVVETNIYDRW 147
>07_03_0493 +
18747427-18748356,18748594-18748697,18749586-18749795,
18749992-18750597,18750819-18751095,18751163-18751310,
18751957-18752044,18752167-18752284
Length = 826
Score = 27.5 bits (58), Expect = 6.7
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = -2
Query: 249 AHQRSW*QS*LQQVSECKYDEGWQHNAHRTNQGHTEPAL*SELSLQDPCAQV 94
A QR Q L VS EGWQH++ + L E+ ++ AQV
Sbjct: 671 ADQRVSAQCSLAPVSHLHQQEGWQHSSFEHQHHENQNFLEMEVRVRSEMAQV 722
>03_02_0901 + 12267042-12267182,12267949-12268095,12268163-12268253,
12268367-12268485,12268779-12268969,12269440-12269650,
12270072-12270309,12270944-12271329,12271933-12271956,
12271984-12272077,12272341-12272525,12273025-12273255,
12273665-12273730,12273816-12274034,12274764-12275003,
12275244-12275423,12276269-12276535,12276612-12276815,
12276896-12277048
Length = 1128
Score = 27.5 bits (58), Expect = 6.7
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = +3
Query: 36 QDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRHIY 200
+D+I+ + ++ V+VP + +LV TA L P D W +R A LR +
Sbjct: 947 EDRILMSDIVFMRAWVNVEVPTYCNLVTTA----LQPQDETWQGMRTTAELRRAH 997
>05_01_0089 +
589457-589506,589598-589741,589820-589903,590118-590261,
590351-590401,590492-590641,591175-591488,592685-592815,
593131-593451,594994-595057,595322-595443
Length = 524
Score = 27.1 bits (57), Expect = 8.8
Identities = 12/54 (22%), Positives = 26/54 (48%)
Frame = +3
Query: 3 KMRSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWF 164
++ ++ V D +++ + + H K TG ++ E+ ++ L PY D F
Sbjct: 224 EVAALIVNDTSENQKGRDIIVHYKDTGPRRISENHPKFMAMQYPLLFPYGEDGF 277
>01_06_1208 +
35424241-35424370,35424415-35424728,35424782-35424967,
35425361-35425523,35425601-35425787,35425875-35426016
Length = 373
Score = 27.1 bits (57), Expect = 8.8
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -3
Query: 362 HRPELSQQASMPPTIAKPCVQYCLMTCRN 276
H + + + P TIA+ +QYCL TC N
Sbjct: 116 HPTQDPEATNSPFTIAQLQLQYCLHTCTN 144
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,587,435
Number of Sequences: 37544
Number of extensions: 250562
Number of successful extensions: 631
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 631
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1106928780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -