Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30363
(514 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_54531| Best HMM Match : Ribosomal_S19e (HMM E-Value=5e-30) 62 3e-10
SB_9755| Best HMM Match : Sushi (HMM E-Value=0) 30 1.3
SB_8022| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_9024| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_38543| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.9
SB_31846| Best HMM Match : Trypsin (HMM E-Value=0) 28 5.2
SB_44212| Best HMM Match : DUF1071 (HMM E-Value=5.9) 27 9.1
SB_16945| Best HMM Match : SecA_SW (HMM E-Value=9.3e-39) 27 9.1
SB_29339| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
>SB_54531| Best HMM Match : Ribosomal_S19e (HMM E-Value=5e-30)
Length = 92
Score = 61.7 bits (143), Expect = 3e-10
Identities = 28/52 (53%), Positives = 37/52 (71%)
Frame = +2
Query: 251 QSNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRILTTQGRRDLDRI 406
++ G PSHF S S+AR L+ LE +KLVEK GGR +T+QG+RD+DRI
Sbjct: 37 KNRGSAPSHFEVGSASVARSVLKGLEQIKLVEKASTGGRNITSQGQRDMDRI 88
Score = 58.8 bits (136), Expect = 2e-09
Identities = 21/32 (65%), Positives = 29/32 (90%)
Frame = +3
Query: 78 TGKVKVPEHMDLVKTARFKELAPYDPDWFYVR 173
+G +K+P+ +DLVKT +FKELAPYDPDW+Y+R
Sbjct: 2 SGNLKIPDWVDLVKTGKFKELAPYDPDWYYIR 33
>SB_9755| Best HMM Match : Sushi (HMM E-Value=0)
Length = 1351
Score = 29.9 bits (64), Expect = 1.3
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +1
Query: 241 LVGAK*WSYTFTFLQVIRQYCTQGFAIVGGIEAC*ESSGRWS 366
L G K S T TF ++ C +GF ++G +S+G+WS
Sbjct: 11 LNGTKTGSLT-TFPNTVKFMCDEGFNLIGSRNRTCQSNGKWS 51
>SB_8022| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 386
Score = 29.9 bits (64), Expect = 1.3
Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
Frame = +3
Query: 18 TVKDVEQDKIVKTVAAHLKKTGKVKVPEHMD-LVKTARFKELAPYDPDWFYVRCAAILRH 194
TV V K KT ++VP ++ L T R E+ + W V+C
Sbjct: 221 TVNKVTGRKYTKTFVIMSGSNRPMRVPHSLEPLTLTNRVAEVT-FCRSWNAVKCTKYCAL 279
Query: 195 IYIRSPVGVKTVTKIFG 245
IY+ S + + V K+ G
Sbjct: 280 IYLHSRLDTQPVNKVIG 296
>SB_9024| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 455
Score = 29.9 bits (64), Expect = 1.3
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +1
Query: 241 LVGAK*WSYTFTFLQVIRQYCTQGFAIVGGIEAC*ESSGRWS 366
L G K S T TF ++ C +GF ++G +S+G+WS
Sbjct: 276 LNGTKTGSLT-TFPNTVKFMCDEGFNLIGSRNRTCQSNGKWS 316
Score = 28.3 bits (60), Expect = 3.9
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +1
Query: 247 GAK*WSYTFTFLQVIRQYCTQGFAIVGG-IEAC*ESSGRWS 366
G K S T TF + C +GF ++G + +C +SSG+WS
Sbjct: 104 GTKTGSLT-TFPNKVTFSCDEGFILIGSPLRSC-QSSGKWS 142
>SB_38543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 346
Score = 28.3 bits (60), Expect = 3.9
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +2
Query: 29 C*TRQDC*NCRCSLKKNGQSQGT*AHGSCKDSSLQRAGSV 148
C QDC + RC +KNG + T A G CK S + ++
Sbjct: 301 CNCMQDCSSSRCFWRKNG-IECTPACGQCKGSDCTNSPAI 339
>SB_31846| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 454
Score = 27.9 bits (59), Expect = 5.2
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +2
Query: 215 WSQDCHQDLWWAQSNGVTPSHF 280
++QD H W Q NG TPS +
Sbjct: 34 YTQDLHDQFDWTQINGSTPSSY 55
>SB_44212| Best HMM Match : DUF1071 (HMM E-Value=5.9)
Length = 274
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = +3
Query: 195 IYIRSPVGVKTVTKIFGGRKVMELHLHISAGHQAVLHARLCNRW 326
+Y+ + +G + K+FGG V L+ H + +A++H LC +W
Sbjct: 170 LYV-ADLGEISYGKLFGG-VVSRLYFHYAG--EALIHDTLCTKW 209
>SB_16945| Best HMM Match : SecA_SW (HMM E-Value=9.3e-39)
Length = 540
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 192 HIYIRSPVGVKTVTKIFGGRKVMELHLHISA 284
H+ I + G K T +FGG +V + HL I +
Sbjct: 22 HMKIYTKTGDKGTTALFGGTRVPKHHLRIES 52
>SB_29339| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1048
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +1
Query: 274 TFLQVIRQYCTQGFAIVGGIEAC*ESSGRWSHSHHT 381
T+ I C +G+A++G +++G WS S+ T
Sbjct: 913 TYSSTINITCDEGYALIGPESRVCQANGTWSGSNVT 948
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,575,727
Number of Sequences: 59808
Number of extensions: 292835
Number of successful extensions: 707
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1136110413
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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