Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30362
         (614 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    24   1.2  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    22   3.6  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    21   6.2  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    21   8.2  

>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +3

Query: 360 PEIQ*LFLSPSICRCPSRQSQEREGP 437
           P  Q  +   + C CP+ Q  ER GP
Sbjct: 279 PRSQRRYTGRATCDCPNCQEAERLGP 304


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +1

Query: 202 PDPSRRWSFNLGVPRHHHYLVNKYAKGSSLY 294
           PD +R+  F L   + +  L  KY    SLY
Sbjct: 201 PDSARKPFFKLLTSKIYKVLEEKYKTSGSLY 231


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -2

Query: 295 GTDCCLWRTCS 263
           G  CC  RTCS
Sbjct: 187 GNKCCCLRTCS 197


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +3

Query: 45  PSTCTTFPALRPAGLYC 95
           PS     PAL PAG  C
Sbjct: 155 PSIIDPGPALPPAGFLC 171


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,284
Number of Sequences: 336
Number of extensions: 3064
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15666150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)