Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30362
         (614 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC191.09c |gst1||glutathione S-transferase Gst1|Schizosaccharo...    38   9e-04
SPCC965.07c |gst2||glutathione S-transferase Gst2|Schizosaccharo...    37   0.003
SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyce...    31   0.13 
SPBC28F2.02 |mep33||mRNA export protein Mep33|Schizosaccharomyce...    25   6.6  
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ...    25   6.6  
SPAC13D6.03c |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual         25   8.7  
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ...    25   8.7  

>SPCC191.09c |gst1||glutathione S-transferase
           Gst1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 229

 Score = 38.3 bits (85), Expect = 9e-04
 Identities = 19/36 (52%), Positives = 24/36 (66%), Gaps = 3/36 (8%)
 Frame = +2

Query: 155 EQLKPEYLKLNPQHTVPTLVD---DGLSIWESRAII 253
           EQ  PE+L LNP   VPTL+D   +  +IWES AI+
Sbjct: 40  EQKSPEHLALNPNGRVPTLIDHHNNDYTIWESDAIL 75


>SPCC965.07c |gst2||glutathione S-transferase
           Gst2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 230

 Score = 36.7 bits (81), Expect = 0.003
 Identities = 20/37 (54%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
 Frame = +2

Query: 152 GEQLKPEYLKLNPQHTVPTLVD---DGLSIWESRAII 253
           GEQ   E+L LNP   VPTLVD   +  +IWES AI+
Sbjct: 39  GEQKCKEHLALNPNGRVPTLVDHKNNDYTIWESDAIL 75


>SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 242

 Score = 31.1 bits (67), Expect = 0.13
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = +2

Query: 167 PEYLKLNPQHTVPTLVDDGLSIWESRAII 253
           P Y KL+P    P +VDDG++  ES AI+
Sbjct: 40  PAYTKLSPLGKSPIVVDDGVTYIESAAIL 68


>SPBC28F2.02 |mep33||mRNA export protein Mep33|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 292

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +1

Query: 412 DKAKNEKVQEALQLLDKFLEGQKYVAGPNLTVAT 513
           DK K++  +E    L+ F+E +++  GPNLT  T
Sbjct: 180 DKKKDDTKEEIS--LEAFIEIERHRLGPNLTPVT 211


>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = -1

Query: 500 RFGPATYF*PSRNLSSS*RASWTFSFLALSAGAPANTWG 384
           RF  A+    S  +SSS  ++WT+    LS+GA + T+G
Sbjct: 44  RFSTASRSVKSGLISSSTVSAWTWPATLLSSGAWSYTYG 82


>SPAC13D6.03c |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 228

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +1

Query: 181 VEPSTHGPDPSRRWSFNLGVPRHHHY 258
           +    H P PS R+ F L +   HH+
Sbjct: 85  ISDGLHVPHPSNRFDFALSIAVIHHF 110


>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1213

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +1

Query: 394 FAGAPADKAKNEKVQEALQLLDKF-LEGQKYVA 489
           F  AP D  ++ KV+  LQL D+F  E  KY A
Sbjct: 118 FIVAPLDLFRDSKVKPLLQLNDRFKAEQAKYDA 150


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,416,272
Number of Sequences: 5004
Number of extensions: 49321
Number of successful extensions: 162
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)