Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30362
(614 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_30534| Best HMM Match : EGF (HMM E-Value=0.12) 34 0.11
SB_48592| Best HMM Match : Galactosyl_T (HMM E-Value=1.5e-26) 31 0.98
SB_31796| Best HMM Match : SAP (HMM E-Value=3.5e-10) 30 1.7
SB_47052| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_7075| Best HMM Match : Hormone_5 (HMM E-Value=2.3) 29 2.3
SB_32767| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_10754| Best HMM Match : C2 (HMM E-Value=5.1e-40) 29 2.3
SB_56336| Best HMM Match : Ag332 (HMM E-Value=5.1) 28 5.2
SB_32511| Best HMM Match : DUF885 (HMM E-Value=8.6e-15) 28 5.2
SB_59680| Best HMM Match : Extensin_2 (HMM E-Value=1.2) 28 6.9
SB_38271| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_50849| Best HMM Match : Galactosyl_T (HMM E-Value=0.066) 27 9.1
SB_45852| Best HMM Match : I-set (HMM E-Value=0) 27 9.1
SB_37423| Best HMM Match : K_tetra (HMM E-Value=3.2e-31) 27 9.1
SB_36280| Best HMM Match : Dehydrin (HMM E-Value=4.4) 27 9.1
SB_29502| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
>SB_30534| Best HMM Match : EGF (HMM E-Value=0.12)
Length = 521
Score = 33.9 bits (74), Expect = 0.11
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Frame = +1
Query: 118 KPEPQTGRPTPRG-TAQTRIFEVEPSTHGPDPS--RRWSFNLGVPRHHHYLVNKYAKGSS 288
+PEP+T P PR +TR + +P T+ PDP + W P + + + G S
Sbjct: 289 RPEPRTELPQPRTYRPETRTYRPDPRTYRPDPKTYQPWPQRTESPEDKYLKTSSHGGGDS 348
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +1
Query: 118 KPEPQTGRPTPR-GTAQTRIFEVEPSTHGPDP 210
+P P+T RP PR Q R + E T+ PDP
Sbjct: 282 RPRPKTRRPEPRTELPQPRTYRPETRTYRPDP 313
>SB_48592| Best HMM Match : Galactosyl_T (HMM E-Value=1.5e-26)
Length = 492
Score = 30.7 bits (66), Expect = 0.98
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +2
Query: 167 PEYLKLNPQHTVPTLVDDGLSIWESRAIITTW*TSTPKAAVCTPKTP 307
PE+L +NP VP +V +G +++ES I + PK P
Sbjct: 299 PEWLAINPNGLVPVIVHNGNAVYESSICIEFIDEAFSTPVTILPKDP 345
>SB_31796| Best HMM Match : SAP (HMM E-Value=3.5e-10)
Length = 1029
Score = 29.9 bits (64), Expect = 1.7
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +1
Query: 244 RHHHYLV-NKYAKGSSLYPEDPKARALVDQRLYFDIGTLYQRFSDYFYPQVFAGAPA 411
++H Y N + SSL + P A L Q+LY + LYQ YP F G P+
Sbjct: 285 KYHEYRPPNGEVEKSSLPMDSPYALMLQQQQLYLQLQVLYQN-----YPCQFVGLPS 336
>SB_47052| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 516
Score = 29.5 bits (63), Expect = 2.3
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = +1
Query: 253 HYLVNKYAKGSSLYPEDPKARALVDQRLYFDIGTLYQRFSD 375
H V KY KG+ DP A V+ + +FD+G +++ FSD
Sbjct: 306 HEHVEKYLKGTKRV--DPSLNAAVNGQ-FFDLGLMHKYFSD 343
>SB_7075| Best HMM Match : Hormone_5 (HMM E-Value=2.3)
Length = 1259
Score = 29.5 bits (63), Expect = 2.3
Identities = 18/54 (33%), Positives = 23/54 (42%)
Frame = -3
Query: 297 GVQTAAFGVLVHQVVMMARDSQIERPSSTRVGTVC*GFNFKYSGLSCSPWCRST 136
G Q G L H+ + S I+RP TR + F GL C PW + T
Sbjct: 971 GEQLCLVGQLYHRARWSS--SVIDRPLHTRPRSALRRQRFALPGLGCYPWSKQT 1022
>SB_32767| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1259
Score = 29.5 bits (63), Expect = 2.3
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Frame = +3
Query: 408 SRQSQEREGPGSPSAAGQVPRRSEVRGRTEPHRRDLSLIASVSSLEAS---DIDFKK 569
+R E +G + S Q PR+S R R+ P + + +IA+++S E + D DFKK
Sbjct: 155 TRSGAESDGGSTHSVTDQYPRKS--RNRSAPSQISV-VIANIASFEMTAEEDEDFKK 208
>SB_10754| Best HMM Match : C2 (HMM E-Value=5.1e-40)
Length = 2057
Score = 29.5 bits (63), Expect = 2.3
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Frame = +1
Query: 133 TGRPTPRGTAQTRIFEVEPSTHGPDPSRRWSFNLGVPRHHHY---LVNKYAKGSSLYPED 303
+ + TP T + E P G R+ S + G+P+ + L +K+ KG + + D
Sbjct: 1116 SSQDTPEETRKNEGTETHPKRSGESSPRKDSKHHGLPKRNSMLGALAHKFGKGKTKHSSD 1175
Query: 304 PKA 312
KA
Sbjct: 1176 AKA 1178
>SB_56336| Best HMM Match : Ag332 (HMM E-Value=5.1)
Length = 366
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +1
Query: 124 EPQTGRPTPRGTAQTRIFEVEPSTHGP 204
EP+T R + R T Q I E EP GP
Sbjct: 208 EPKTRRTSRRRTKQEEIVEEEPKQEGP 234
>SB_32511| Best HMM Match : DUF885 (HMM E-Value=8.6e-15)
Length = 510
Score = 28.3 bits (60), Expect = 5.2
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = -1
Query: 302 SSGYRLLPLAYLFTK***WRGTPRLKDHRRLGSGPCVEGS 183
SSG LPL+Y++T GTP +K + L +G + G+
Sbjct: 53 SSGLATLPLSYVYT-----NGTPGIKTTKTLPTGEVLNGT 87
>SB_59680| Best HMM Match : Extensin_2 (HMM E-Value=1.2)
Length = 412
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +3
Query: 396 CRCPSRQSQEREGPGSPSAAGQVPRRSEVRGRTEPH 503
C+ P+ SQ R PG A +R + G T P+
Sbjct: 52 CQTPAAASQARPAPGRAPARNPAQQRVNLPGYTSPY 87
>SB_38271| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 467
Score = 27.9 bits (59), Expect = 6.9
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Frame = -2
Query: 547 ASRLETLAMRLKSRR*GSVRPRTSDLRGTCPAAEGLPGPSRS-WLCRLGHRQILGDRNNH 371
A + + L+SR S++P S ++ E LP SRS WL L ++H
Sbjct: 76 AQQKQRYGTELRSRTLASIKPEISSIQDVIDGNERLPFTSRSAWLAIQSECPDLRRTHSH 135
Query: 370 *ISGTK 353
GT+
Sbjct: 136 LKQGTR 141
>SB_50849| Best HMM Match : Galactosyl_T (HMM E-Value=0.066)
Length = 147
Score = 27.5 bits (58), Expect = 9.1
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = -3
Query: 339 IQPLVNESTSFGVFGVQTAAFGVLVHQ 259
++ L+ S+S +F V+ A FG+LVH+
Sbjct: 60 LEKLIRLSSSIAMFEVEDAYFGLLVHR 86
>SB_45852| Best HMM Match : I-set (HMM E-Value=0)
Length = 1122
Score = 27.5 bits (58), Expect = 9.1
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +1
Query: 493 PNLTVAT*VSSPVSPAWKPLTLTSRNTPTLRDGTR 597
P + ++ V S V P KPLTL +T T GTR
Sbjct: 447 PKIQLSNKVYSVVDPLKKPLTLLVGDTLTTLSGTR 481
>SB_37423| Best HMM Match : K_tetra (HMM E-Value=3.2e-31)
Length = 153
Score = 27.5 bits (58), Expect = 9.1
Identities = 16/51 (31%), Positives = 22/51 (43%)
Frame = +1
Query: 196 HGPDPSRRWSFNLGVPRHHHYLVNKYAKGSSLYPEDPKARALVDQRLYFDI 348
H DPS++ F P Y++ Y G YPE+ A + YF I
Sbjct: 80 HFYDPSKKEYFFDRDPEVFKYIITFYKTGKLHYPEEECACCFETECAYFGI 130
>SB_36280| Best HMM Match : Dehydrin (HMM E-Value=4.4)
Length = 426
Score = 27.5 bits (58), Expect = 9.1
Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Frame = +3
Query: 408 SRQSQEREGPGS----PSAAGQVPRRSEVRGRTEPHRRDLSLIASVSSLEASD 554
SR+S ER+ P S S R S R+ PHRRD S + S +SD
Sbjct: 42 SRESPERKRPSSLGRDSSERRPSARVSSDNSRSPPHRRDSSRRSHSPSRRSSD 94
>SB_29502| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 697
Score = 27.5 bits (58), Expect = 9.1
Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Frame = +3
Query: 408 SRQSQEREGPGSPSAAGQVPRRSEVR-----GRTEPHRRDLSLIASVSSLEASD 554
SR+S ER+ P S RR VR R+ PHRRD S + S +SD
Sbjct: 42 SRESPERKRPSSLGRDSS-ERRPSVRVSSDNSRSPPHRRDSSRRSHSPSRRSSD 94
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,634,284
Number of Sequences: 59808
Number of extensions: 399057
Number of successful extensions: 1399
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1397
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1512078125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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