Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30362
(614 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024200-13|AAF36004.1| 214|Caenorhabditis elegans Glutathione ... 35 0.053
Z66560-1|CAA91449.1| 214|Caenorhabditis elegans Hypothetical pr... 31 0.65
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr... 29 2.6
Z72510-4|CAE17846.1| 116|Caenorhabditis elegans Hypothetical pr... 29 3.5
U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein (sp... 29 3.5
AF101312-4|AAC69220.1| 358|Caenorhabditis elegans Hypothetical ... 29 3.5
AL024499-6|CAA19709.1| 326|Caenorhabditis elegans Hypothetical ... 28 4.6
Z71178-8|CAA94882.1| 552|Caenorhabditis elegans Hypothetical pr... 28 6.1
U70857-3|AAN84873.1| 950|Caenorhabditis elegans Na/ca exchanger... 28 6.1
U70857-2|AAM29660.1| 975|Caenorhabditis elegans Na/ca exchanger... 28 6.1
U70857-1|AAM29661.1| 925|Caenorhabditis elegans Na/ca exchanger... 28 6.1
AJ001181-1|CAA04574.1| 925|Caenorhabditis elegans sodium-calciu... 28 6.1
AF036688-2|AAY86223.1| 91|Caenorhabditis elegans Hypothetical ... 27 8.1
AC006804-5|AAF60754.1| 213|Caenorhabditis elegans Hypothetical ... 27 8.1
AC006665-5|AAF39907.1| 630|Caenorhabditis elegans Hypothetical ... 27 8.1
>AC024200-13|AAF36004.1| 214|Caenorhabditis elegans Glutathione
s-transferase protein43 protein.
Length = 214
Score = 34.7 bits (76), Expect = 0.053
Identities = 17/28 (60%), Positives = 21/28 (75%)
Frame = +2
Query: 170 EYLKLNPQHTVPTLVDDGLSIWESRAII 253
E++K NP VPTLV +GLS+ ES AII
Sbjct: 46 EFVKHNPAKKVPTLVINGLSLTESLAII 73
>Z66560-1|CAA91449.1| 214|Caenorhabditis elegans Hypothetical
protein D1053.1 protein.
Length = 214
Score = 31.1 bits (67), Expect = 0.65
Identities = 20/51 (39%), Positives = 26/51 (50%)
Frame = +2
Query: 155 EQLKPEYLKLNPQHTVPTLVDDGLSIWESRAIITTW*TSTPKAAVCTPKTP 307
E+ K + ++NP VPT V DG I ES AII + P + PK P
Sbjct: 41 EEAKSKLKEINPAAKVPTFVVDGQVITESLAIIEYLEETHPDVPL-LPKDP 90
>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical
protein C01G8.9a protein.
Length = 1724
Score = 29.1 bits (62), Expect = 2.6
Identities = 16/48 (33%), Positives = 19/48 (39%)
Frame = +1
Query: 106 GAQLKPEPQTGRPTPRGTAQTRIFEVEPSTHGPDPSRRWSFNLGVPRH 249
G P P G P P G Q R+ P+ P PS N PR+
Sbjct: 805 GGPRPPYPYPGGPVPPGPPQNRMPPPPPAQGAPSPSGAAGSNGKQPRY 852
>Z72510-4|CAE17846.1| 116|Caenorhabditis elegans Hypothetical
protein F53B7.7 protein.
Length = 116
Score = 28.7 bits (61), Expect = 3.5
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -2
Query: 316 HELWGLRGTDCCLWRTCS 263
H++W L G+DC + TCS
Sbjct: 19 HQMWCLDGSDCAISNTCS 36
>U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform d protein.
Length = 208
Score = 28.7 bits (61), Expect = 3.5
Identities = 19/51 (37%), Positives = 28/51 (54%)
Frame = +3
Query: 408 SRQSQEREGPGSPSAAGQVPRRSEVRGRTEPHRRDLSLIASVSSLEASDID 560
SR+S+ R S S + RRSE R + +RDL L A++S +S +D
Sbjct: 114 SRRSRSRSSSRSRSPVRESRRRSESRSPSP--KRDLQLRANISVSYSSPLD 162
>AF101312-4|AAC69220.1| 358|Caenorhabditis elegans Hypothetical
protein F56E10.1 protein.
Length = 358
Score = 28.7 bits (61), Expect = 3.5
Identities = 16/39 (41%), Positives = 25/39 (64%)
Frame = +3
Query: 495 EPHRRDLSLIASVSSLEASDIDFKKYANVKRWYETVKST 611
EP+ D+ L ++ S+E D++F KYA KR ET+K +
Sbjct: 204 EPNSSDIWLDVALKSIEFGDLNFSKYA-FKR-CETLKES 240
>AL024499-6|CAA19709.1| 326|Caenorhabditis elegans Hypothetical
protein H38K22.3 protein.
Length = 326
Score = 28.3 bits (60), Expect = 4.6
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 455 WTSSSKVRSTWPDRTSPSRLESHRQCLQP 541
WT+SS + +TW + + PSR H Q + P
Sbjct: 62 WTASS-IDATWNEVSIPSRKAEHIQAINP 89
>Z71178-8|CAA94882.1| 552|Caenorhabditis elegans Hypothetical
protein B0024.10 protein.
Length = 552
Score = 27.9 bits (59), Expect = 6.1
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = -3
Query: 393 YLGIEIITESLVQSSDVEIQPLVNESTSFGVFGVQTAAFGVLVHQVV 253
+ ++++T L D+E+ P +ST FG QT +VH V+
Sbjct: 444 FTNLKVVTNELKNFVDIELAP---KSTLIASFGGQTVNAADVVHNVI 487
>U70857-3|AAN84873.1| 950|Caenorhabditis elegans Na/ca exchangers
protein 2, isoformd protein.
Length = 950
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -1
Query: 566 LEVNVRGFQAGDTGDETQVATVRF 495
+EV RGF+AGD G T V + F
Sbjct: 135 IEVIARGFEAGDLGPNTIVGSAAF 158
>U70857-2|AAM29660.1| 975|Caenorhabditis elegans Na/ca exchangers
protein 2, isoforma protein.
Length = 975
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -1
Query: 566 LEVNVRGFQAGDTGDETQVATVRF 495
+EV RGF+AGD G T V + F
Sbjct: 135 IEVIARGFEAGDLGPNTIVGSAAF 158
>U70857-1|AAM29661.1| 925|Caenorhabditis elegans Na/ca exchangers
protein 2, isoformb protein.
Length = 925
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -1
Query: 566 LEVNVRGFQAGDTGDETQVATVRF 495
+EV RGF+AGD G T V + F
Sbjct: 135 IEVIARGFEAGDLGPNTIVGSAAF 158
>AJ001181-1|CAA04574.1| 925|Caenorhabditis elegans sodium-calcium
exchanger protein.
Length = 925
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -1
Query: 566 LEVNVRGFQAGDTGDETQVATVRF 495
+EV RGF+AGD G T V + F
Sbjct: 135 IEVIARGFEAGDLGPNTIVGSAAF 158
>AF036688-2|AAY86223.1| 91|Caenorhabditis elegans Hypothetical
protein C24D10.9 protein.
Length = 91
Score = 27.5 bits (58), Expect = 8.1
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +3
Query: 417 SQEREGPGSPSAAGQVPRRSEVRGRTEPHRRDLSL 521
S PGS S++G RR + + RR LSL
Sbjct: 20 SSSTSAPGSASSSGPTKRRGRIAASIDSARRRLSL 54
>AC006804-5|AAF60754.1| 213|Caenorhabditis elegans Hypothetical
protein Y53G8B.1 protein.
Length = 213
Score = 27.5 bits (58), Expect = 8.1
Identities = 19/53 (35%), Positives = 27/53 (50%)
Frame = +2
Query: 155 EQLKPEYLKLNPQHTVPTLVDDGLSIWESRAIITTW*TSTPKAAVCTPKTPKL 313
+Q + E+ NP VP L +GL++ ES AII P + PK P+L
Sbjct: 40 KQKEQEFHGNNPAEKVPILKINGLTLTESMAIIEYLDEIYPDPPL-LPKEPEL 91
>AC006665-5|AAF39907.1| 630|Caenorhabditis elegans Hypothetical
protein H27M09.1 protein.
Length = 630
Score = 27.5 bits (58), Expect = 8.1
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +1
Query: 412 DKAKNEKVQEALQLLDKFLEGQKYVAGPNLTVAT*VSSPVSPAWKP 549
D+++ + ++E +LLDK G +A LT P+ AW+P
Sbjct: 112 DESERQLMEEE-ELLDKVTRGGGLLAVAELTKGEKYEEPIVTAWRP 156
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,564,957
Number of Sequences: 27780
Number of extensions: 292178
Number of successful extensions: 1077
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 952
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1077
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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