Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30360
(598 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P39023 Cluster: 60S ribosomal protein L3; n=228; Eukary... 132 8e-30
UniRef50_Q92901 Cluster: 60S ribosomal protein L3-like; n=44; Bi... 125 7e-28
UniRef50_Q6BEU5 Cluster: Putative uncharacterized protein rpl-3;... 117 2e-25
UniRef50_Q581Q2 Cluster: Ribosomal protein L3, putative; n=6; Tr... 112 5e-24
UniRef50_Q3LWC1 Cluster: Ribosomal protein L3; n=1; Bigelowiella... 100 5e-20
UniRef50_Q8TZZ8 Cluster: 50S ribosomal protein L3P; n=4; Thermoc... 73 7e-12
UniRef50_UPI0000503B42 Cluster: UPI0000503B42 related cluster; n... 62 1e-08
UniRef50_P60458 Cluster: 50S ribosomal protein L3P; n=1; Nanoarc... 57 4e-07
UniRef50_A7DSZ4 Cluster: Ribosomal protein L3; n=1; Candidatus N... 56 5e-07
UniRef50_Q9YFM2 Cluster: 50S ribosomal protein L3P; n=6; Thermop... 54 3e-06
UniRef50_P54014 Cluster: 50S ribosomal protein L3P; n=6; Euryarc... 53 4e-06
UniRef50_Q97BX7 Cluster: 50S ribosomal protein L3P; n=4; Thermop... 52 1e-05
UniRef50_Q8TY90 Cluster: 50S ribosomal protein L3P; n=13; Euryar... 50 4e-05
UniRef50_Q9HPD4 Cluster: 50S ribosomal protein L3P; n=4; Euryarc... 50 4e-05
UniRef50_Q0W1Y9 Cluster: 50S ribosomal protein L3P; n=4; Euryarc... 50 5e-05
UniRef50_UPI000061854E Cluster: 60S ribosomal protein L3 (HIV-1 ... 47 3e-04
UniRef50_Q673S9 Cluster: Ribosomal protein L3; n=1; uncultured m... 47 4e-04
UniRef50_Q59LS0 Cluster: Putative uncharacterized protein; n=1; ... 46 7e-04
UniRef50_Q2QAT1 Cluster: Ribosomal protein L3; n=1; uncultured m... 46 9e-04
UniRef50_A1RWR0 Cluster: 50S ribosomal protein L3; n=1; Thermofi... 44 0.002
UniRef50_UPI00015BB2A1 Cluster: LSU ribosomal protein L3P; n=1; ... 44 0.003
UniRef50_A0RVX4 Cluster: 50S ribosomal protein L3; n=1; Cenarcha... 44 0.003
UniRef50_A3DNA4 Cluster: 50S ribosomal protein L3; n=1; Staphylo... 44 0.004
UniRef50_Q9UXA8 Cluster: 50S ribosomal protein L3P; n=5; Thermop... 41 0.019
UniRef50_Q99N25 Cluster: Ribosomal protein L3; n=2; Theria|Rep: ... 33 6.7
>UniRef50_P39023 Cluster: 60S ribosomal protein L3; n=228;
Eukaryota|Rep: 60S ribosomal protein L3 - Homo sapiens
(Human)
Length = 403
Score = 132 bits (318), Expect = 8e-30
Identities = 60/105 (57%), Positives = 73/105 (69%)
Frame = +2
Query: 236 EMGQRTLEXPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTKKLPRKXHKGLRKVACI 415
+ + LE +PV+ VF QDEMID I SRWHTKKLPRK H+GLRKVACI
Sbjct: 195 DWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACI 254
Query: 416 GAWHPSRVSFTVARAGQXGYHHRTXMNKKIYVLDKESTKRMAKLL 550
GAWHP+RV+F+VARAGQ GYHHRT +NKKIY + + + KL+
Sbjct: 255 GAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLI 299
Score = 109 bits (261), Expect = 6e-23
Identities = 47/83 (56%), Positives = 58/83 (69%)
Frame = +3
Query: 3 RFYKNWYXXXXXXXXXXXXXWQDELGRKSIXKXFKKMIRYCSVVRVIAHTQMKLLKQRQK 182
RFYKNW+ WQDE G+K + K F M +YC V+RVIAHTQM+LL RQK
Sbjct: 117 RFYKNWHKSKKKAFTKYCKKWQDEDGKKQLEKDFSSMKKYCQVIRVIAHTQMRLLPLRQK 176
Query: 183 KAHIMEIQLNGGTIEDKVKWARE 251
KAH+MEIQ+NGGT+ +K+ WARE
Sbjct: 177 KAHLMEIQVNGGTVAEKLDWARE 199
Score = 42.7 bits (96), Expect = 0.006
Identities = 20/28 (71%), Positives = 23/28 (82%)
Frame = +1
Query: 511 IGQGIHKKDGKVIXXNASTEYDLSEKSI 594
IGQG KDGK+I NAST+YDLS+KSI
Sbjct: 287 IGQGYLIKDGKLIKNNASTDYDLSDKSI 314
>UniRef50_Q92901 Cluster: 60S ribosomal protein L3-like; n=44;
Bilateria|Rep: 60S ribosomal protein L3-like - Homo
sapiens (Human)
Length = 407
Score = 125 bits (302), Expect = 7e-28
Identities = 58/102 (56%), Positives = 69/102 (67%)
Frame = +2
Query: 245 QRTLEXPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTKKLPRKXHKGLRKVACIGAW 424
Q LE +PV SVF+Q E+ID I SRWHTKKLPRK HKGLRKVACIGAW
Sbjct: 198 QARLEKQVPVHSVFSQSEVIDVIAVTKGRGVKGVTSRWHTKKLPRKTHKGLRKVACIGAW 257
Query: 425 HPSRVSFTVARAGQXGYHHRTXMNKKIYVLDKESTKRMAKLL 550
HP+RV ++ARAGQ GYHHRT +NKKI+ + + KL+
Sbjct: 258 HPARVGCSIARAGQKGYHHRTELNKKIFRIGRGPHMEDGKLV 299
Score = 101 bits (241), Expect = 2e-20
Identities = 45/82 (54%), Positives = 55/82 (67%)
Frame = +3
Query: 3 RFYKNWYXXXXXXXXXXXXXWQDELGRKSIXKXFKKMIRYCSVVRVIAHTQMKLLKQRQK 182
RFYK+W+ W+D G+K + K F M +YC V+RVI HTQMKLL RQK
Sbjct: 117 RFYKDWHKSKKKAFTKACKRWRDTDGKKQLQKDFAAMKKYCKVIRVIVHTQMKLLPFRQK 176
Query: 183 KAHIMEIQLNGGTIEDKVKWAR 248
KAHIMEIQLNGGT+ +KV WA+
Sbjct: 177 KAHIMEIQLNGGTVAEKVAWAQ 198
Score = 41.1 bits (92), Expect = 0.019
Identities = 17/29 (58%), Positives = 23/29 (79%)
Frame = +1
Query: 511 IGQGIHKKDGKVIXXNASTEYDLSEKSIT 597
IG+G H +DGK++ NAST YD++ KSIT
Sbjct: 287 IGRGPHMEDGKLVKNNASTSYDVTAKSIT 315
>UniRef50_Q6BEU5 Cluster: Putative uncharacterized protein rpl-3;
n=1; Caenorhabditis elegans|Rep: Putative
uncharacterized protein rpl-3 - Caenorhabditis elegans
Length = 353
Score = 117 bits (282), Expect = 2e-25
Identities = 54/88 (61%), Positives = 60/88 (68%)
Frame = +2
Query: 281 VFAQDEMIDCIXXXXXXXXXXXXSRWHTKKLPRKXHKGLRKVACIGAWHPSRVSFTVARA 460
V A +MID I SRWHTKKLPRK HKGLRKVACIGAWHPSRV+FTVARA
Sbjct: 162 VIAHTQMIDTIGVTRGHGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVAFTVARA 221
Query: 461 GQXGYHHRTXMNKKIYVLDKESTKRMAK 544
GQ G+HHRT +N KIY + K + K
Sbjct: 222 GQKGFHHRTIINNKIYRIGKSALTEEGK 249
Score = 55.2 bits (127), Expect = 1e-06
Identities = 25/52 (48%), Positives = 29/52 (55%)
Frame = +3
Query: 3 RFYKNWYXXXXXXXXXXXXXWQDELGRKSIXKXFKKMIRYCSVVRVIAHTQM 158
RFY NW WQDE G+K I F K+ +YCS +RVIAHTQM
Sbjct: 117 RFYSNWAKSKKKAFTKYAKKWQDEDGKKLIEADFAKLKKYCSSIRVIAHTQM 168
>UniRef50_Q581Q2 Cluster: Ribosomal protein L3, putative; n=6;
Trypanosomatidae|Rep: Ribosomal protein L3, putative -
Trypanosoma brucei
Length = 480
Score = 112 bits (270), Expect = 5e-24
Identities = 52/95 (54%), Positives = 60/95 (63%)
Frame = +2
Query: 236 EMGQRTLEXPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTKKLPRKXHKGLRKVACI 415
E+ + LE + +DSVF Q E D RW LPRK H+GLRKVACI
Sbjct: 249 ELAKSLLEKEVRIDSVFQQSEACDVCAVTKGHGFTGVVKRWGVACLPRKTHRGLRKVACI 308
Query: 416 GAWHPSRVSFTVARAGQXGYHHRTXMNKKIYVLDK 520
GAWHPSRV +TVARAGQ GYHHRT +NKKIY L +
Sbjct: 309 GAWHPSRVMYTVARAGQHGYHHRTHLNKKIYQLGR 343
Score = 60.1 bits (139), Expect = 4e-08
Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Frame = +3
Query: 3 RFYKNWYXXXXXXXXXXXXXWQDELGRKSIXKXFKKMIRYCSVVRVIAHTQMKLLKQRQ- 179
RFYKNW + GR + + K + ++RV+AHTQ++ L+ +
Sbjct: 168 RFYKNWKQSAQLAFTKRKQFARTTEGRLAEARTLKAFEKKADIIRVVAHTQLRKLRNNRV 227
Query: 180 --KKAHIMEIQLNGGTIEDKVKWAR 248
KKAH+ EIQ+NGGTI K++ A+
Sbjct: 228 GVKKAHVSEIQINGGTIAQKIELAK 252
>UniRef50_Q3LWC1 Cluster: Ribosomal protein L3; n=1; Bigelowiella
natans|Rep: Ribosomal protein L3 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 370
Score = 99.5 bits (237), Expect = 5e-20
Identities = 44/86 (51%), Positives = 58/86 (67%)
Frame = +2
Query: 266 IPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTKKLPRKXHKGLRKVACIGAWHPSRVSF 445
I ++S+F ++++ID I SRW +LPRK H+GLRKVACIG W PSRV++
Sbjct: 187 IYINSIFHENDIIDAIGITKGHGTKGVVSRWGITRLPRKTHRGLRKVACIGPWTPSRVAW 246
Query: 446 TVARAGQXGYHHRTXMNKKIYVLDKE 523
T++RAGQ GYH RT NKKIY + E
Sbjct: 247 TISRAGQKGYHKRTLFNKKIYKIGSE 272
>UniRef50_Q8TZZ8 Cluster: 50S ribosomal protein L3P; n=4;
Thermococcaceae|Rep: 50S ribosomal protein L3P -
Pyrococcus furiosus
Length = 365
Score = 72.5 bits (170), Expect = 7e-12
Identities = 33/89 (37%), Positives = 46/89 (51%)
Frame = +2
Query: 272 VDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTKKLPRKXHKGLRKVACIGAWHPSRVSFTV 451
V V + E++D I RW K K KG RKV IG WHP+RV +TV
Sbjct: 209 VGEVLKEGELLDVIAVTKGKGTQGPVKRWGIKLRAHKDSKGRRKVGSIGPWHPARVMWTV 268
Query: 452 ARAGQXGYHHRTXMNKKIYVLDKESTKRM 538
AGQ G+HHRT +NK++ + + ++
Sbjct: 269 PMAGQMGFHHRTELNKRLIAIGENGKLKL 297
>UniRef50_UPI0000503B42 Cluster: UPI0000503B42 related cluster; n=2;
Rattus norvegicus|Rep: UPI0000503B42 UniRef100 entry -
Rattus norvegicus
Length = 380
Score = 61.7 bits (143), Expect = 1e-08
Identities = 29/70 (41%), Positives = 41/70 (58%)
Frame = +3
Query: 6 FYKNWYXXXXXXXXXXXXXWQDELGRKSIXKXFKKMIRYCSVVRVIAHTQMKLLKQRQKK 185
FYKNW+ ++G++ + FK M +YC V+ ++AHTQM LL QKK
Sbjct: 118 FYKNWHSEKKASTKYF------DMGKRQLEMEFKSMKKYCQVICIVAHTQMCLLSLHQKK 171
Query: 186 AHIMEIQLNG 215
AH+MEIQ+ G
Sbjct: 172 AHLMEIQVMG 181
Score = 56.8 bits (131), Expect = 4e-07
Identities = 30/72 (41%), Positives = 40/72 (55%)
Frame = +2
Query: 290 QDEMIDCIXXXXXXXXXXXXSRWHTKKLPRKXHKGLRKVACIGAWHPSRVSFTVARAGQX 469
QDE+ID I + P + +G K+ C+GAWHP+RV+F+VA+ GQ
Sbjct: 193 QDEIIDVIKETKGNGYKGVTRVDIQRNCPERPIEGCPKL-CVGAWHPARVTFSVAQVGQK 251
Query: 470 GYHHRTXMNKKI 505
GYHH NKKI
Sbjct: 252 GYHHNGD-NKKI 262
Score = 40.3 bits (90), Expect = 0.034
Identities = 20/35 (57%), Positives = 25/35 (71%), Gaps = 1/35 (2%)
Frame = +1
Query: 493 EQENLC-IGQGIHKKDGKVIXXNASTEYDLSEKSI 594
+ + +C IGQG KDGK+I NA TEY LS+KSI
Sbjct: 258 DNKKICKIGQGYLIKDGKLIKNNAPTEYHLSDKSI 292
>UniRef50_P60458 Cluster: 50S ribosomal protein L3P; n=1;
Nanoarchaeum equitans|Rep: 50S ribosomal protein L3P -
Nanoarchaeum equitans
Length = 321
Score = 56.8 bits (131), Expect = 4e-07
Identities = 28/80 (35%), Positives = 39/80 (48%)
Frame = +2
Query: 266 IPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTKKLPRKXHKGLRKVACIGAWHPSRVSF 445
+ ++ VF + + +D I R+H + K KG+RKV IG+ P R+
Sbjct: 177 LSINDVFKEGQYVDVIAVTKGKGFQGVIKRFHVHRRQHKSEKGVRKVGAIGSRGPGRIFP 236
Query: 446 TVARAGQXGYHHRTXMNKKI 505
TV GQ GYH RT NK I
Sbjct: 237 TVPMPGQMGYHRRTEYNKLI 256
>UniRef50_A7DSZ4 Cluster: Ribosomal protein L3; n=1; Candidatus
Nitrosopumilus maritimus SCM1|Rep: Ribosomal protein L3
- Candidatus Nitrosopumilus maritimus SCM1
Length = 331
Score = 56.4 bits (130), Expect = 5e-07
Identities = 26/83 (31%), Positives = 39/83 (46%)
Frame = +2
Query: 266 IPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTKKLPRKXHKGLRKVACIGAWHPSRVSF 445
I +D +F +D RW+ KK K K +R+V +G P V +
Sbjct: 185 IKIDQIFETGASVDVAAITKGKGWQGVLKRWNVKKKQHKSRKTVREVGSLGPISPQSVMY 244
Query: 446 TVARAGQXGYHHRTXMNKKIYVL 514
TV RAGQ G+H R +K+I ++
Sbjct: 245 TVPRAGQFGFHQRVEYDKRIMIM 267
>UniRef50_Q9YFM2 Cluster: 50S ribosomal protein L3P; n=6;
Thermoprotei|Rep: 50S ribosomal protein L3P - Aeropyrum
pernix
Length = 344
Score = 54.0 bits (124), Expect = 3e-06
Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 3/92 (3%)
Frame = +2
Query: 266 IPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTKKLPR--KXHKGLRKVACIGAWHPSRV 439
I V+ VF + +++D I RW K+LPR K KG R+ IGA R
Sbjct: 191 IAVNDVFEEGQLVDVIAVTKGKGFQGVIKRWGVKELPRWHKHRKGSRR---IGARSHGRS 247
Query: 440 SF-TVARAGQXGYHHRTXMNKKIYVLDKESTK 532
+F +AGQ G+H RT NK+I ++D + K
Sbjct: 248 TFWETPQAGQTGFHRRTEYNKRILMIDDDGYK 279
>UniRef50_P54014 Cluster: 50S ribosomal protein L3P; n=6;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Methanococcus jannaschii
Length = 335
Score = 53.2 bits (122), Expect = 4e-06
Identities = 28/80 (35%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Frame = +2
Query: 272 VDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTK-KLPRKXHKGL-RKVACIGAWHPSRVSF 445
+ VF + E++D I RW K + + KG+ R V IG W P V +
Sbjct: 186 ITDVFQEGELVDTIGVTKGKGFQGQVKRWGVKIQFGKHARKGVGRHVGSIGPWQPKMVMW 245
Query: 446 TVARAGQXGYHHRTXMNKKI 505
+V GQ GYH RT NK+I
Sbjct: 246 SVPMPGQMGYHQRTEYNKRI 265
Score = 38.3 bits (85), Expect = 0.14
Identities = 17/40 (42%), Positives = 27/40 (67%)
Frame = +3
Query: 132 VRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDKVKWARE 251
VRV+ HT KL +KK I+EI++ G IE+++ +A+E
Sbjct: 139 VRVLVHTNPKLTCLPKKKPEILEIRIGGKDIEERLNYAKE 178
>UniRef50_Q97BX7 Cluster: 50S ribosomal protein L3P; n=4;
Thermoplasmatales|Rep: 50S ribosomal protein L3P -
Thermoplasma volcanium
Length = 331
Score = 51.6 bits (118), Expect = 1e-05
Identities = 24/56 (42%), Positives = 30/56 (53%)
Frame = +2
Query: 353 RWHTKKLPRKXHKGLRKVACIGAWHPSRVSFTVARAGQXGYHHRTXMNKKIYVLDK 520
R+ K LPRK K R + +G WHP V TV +AGQ GY RT N ++ K
Sbjct: 209 RFGVKLLPRKNRKHRRMIGTLGPWHPDWVRNTVPQAGQMGYQQRTISNVRVLKYSK 264
>UniRef50_Q8TY90 Cluster: 50S ribosomal protein L3P; n=13;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Methanopyrus kandleri
Length = 361
Score = 50.0 bits (114), Expect = 4e-05
Identities = 35/104 (33%), Positives = 46/104 (44%), Gaps = 4/104 (3%)
Frame = +2
Query: 224 RGQSEMGQRTLEXPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRW----HTKKLPRKXHK 391
R + E L I VF + E++D RW +K RK K
Sbjct: 176 RERFEYAVEILSEEIRAKDVFDEGEIVDVSAITKGKGFQGVVKRWGVTIQDRKTQRK-QK 234
Query: 392 GLRKVACIGAWHPSRVSFTVARAGQXGYHHRTXMNKKIYVLDKE 523
G R + IG PSRV +TV AGQ GYH RT NK+I + ++
Sbjct: 235 G-RHIGSIGPITPSRVRWTVPMAGQVGYHQRTEHNKRILKIGED 277
>UniRef50_Q9HPD4 Cluster: 50S ribosomal protein L3P; n=4;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Halobacterium salinarium (Halobacterium halobium)
Length = 335
Score = 50.0 bits (114), Expect = 4e-05
Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Frame = +2
Query: 281 VFAQDEMIDCIXXXXXXXXXXXXSRWHTKKLPRKXHKG--LRKVACIGAWHPSRVSFTVA 454
VF E D RW +K K + R++ +G W+PSRV TV
Sbjct: 191 VFRAGEFTDAAGITKGKGTQGPVKRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVP 250
Query: 455 RAGQXGYHHRTXMNKKI 505
+ GQ GYH RT +NK++
Sbjct: 251 QQGQTGYHQRTELNKRL 267
>UniRef50_Q0W1Y9 Cluster: 50S ribosomal protein L3P; n=4;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Uncultured methanogenic archaeon RC-I
Length = 337
Score = 49.6 bits (113), Expect = 5e-05
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 2/92 (2%)
Frame = +2
Query: 236 EMGQRTLEXPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTKKLPRKXHKGLRK--VA 409
E + + + + VFA E++D RW RK + +K V
Sbjct: 177 EFAKSLMGKAVGIKDVFAPGELVDVSAITKGYGTQGPVVRWGIATQKRKHARTGKKRHVG 236
Query: 410 CIGAWHPSRVSFTVARAGQXGYHHRTXMNKKI 505
+G W+P R+ + V + GQ GYH RT NK+I
Sbjct: 237 NLGPWNPHRIRWQVPQLGQTGYHQRTEYNKRI 268
>UniRef50_UPI000061854E Cluster: 60S ribosomal protein L3 (HIV-1 TAR
RNA-binding protein B) (TARBP-B).; n=1; Bos taurus|Rep:
60S ribosomal protein L3 (HIV-1 TAR RNA-binding protein
B) (TARBP-B). - Bos Taurus
Length = 340
Score = 47.2 bits (107), Expect = 3e-04
Identities = 32/105 (30%), Positives = 49/105 (46%)
Frame = +2
Query: 236 EMGQRTLEXPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTKKLPRKXHKGLRKVACI 415
+ + LE +PV+ +F + I S W+TKK+P K H+ + ACI
Sbjct: 151 DWAHKKLEQQVPVNHIFRVRRLF-VIGTTKGKHYKGISSHWYTKKVPWKTHQEFHEAACI 209
Query: 416 GAWHPSRVSFTVARAGQXGYHHRTXMNKKIYVLDKESTKRMAKLL 550
W +VA A Q G HH T +NKKIY + + + K++
Sbjct: 210 --WD----GLSVAWARQKGCHHCT-INKKIYKIGQGYLIKNGKII 247
Score = 33.5 bits (73), Expect = 3.9
Identities = 18/36 (50%), Positives = 23/36 (63%)
Frame = +3
Query: 144 AHTQMKLLKQRQKKAHIMEIQLNGGTIEDKVKWARE 251
A TQM LL QKKAH+ E Q+N G + K+ WA +
Sbjct: 121 ALTQMCLLPLCQKKAHLTESQVNRGPVA-KLDWAHK 155
>UniRef50_Q673S9 Cluster: Ribosomal protein L3; n=1; uncultured
marine group II euryarchaeote DeepAnt-JyKC7|Rep:
Ribosomal protein L3 - uncultured marine group II
euryarchaeote DeepAnt-JyKC7
Length = 358
Score = 46.8 bits (106), Expect = 4e-04
Identities = 26/90 (28%), Positives = 40/90 (44%)
Frame = +2
Query: 236 EMGQRTLEXPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTKKLPRKXHKGLRKVACI 415
E L I +D V+ + +D + R+ K L K K R++ +
Sbjct: 199 EWAHERLGGEIGIDDVYEAGKELDVVGITKGKGWQGVIKRFGVKLLSHKNSKRRRQIGNM 258
Query: 416 GAWHPSRVSFTVARAGQXGYHHRTXMNKKI 505
G + V T+ +AGQ GYH RT +NK+I
Sbjct: 259 GDFGTGYVRKTIRQAGQMGYHKRTELNKRI 288
>UniRef50_Q59LS0 Cluster: Putative uncharacterized protein; n=1;
Candida albicans|Rep: Putative uncharacterized protein -
Candida albicans (Yeast)
Length = 173
Score = 46.0 bits (104), Expect = 7e-04
Identities = 23/72 (31%), Positives = 39/72 (54%)
Frame = -1
Query: 481 VMITXLTSTSYSERHPRRMPSSNAGNFPKXXXXXXXXXLCVPTRSDTFVSFALGDTNAVN 302
+++T LTS+ + MPS+N N + L P+ DT + GD+N +N
Sbjct: 1 MVVTVLTSSGNGPVNVSWMPSTNTSNLSQTSVGLSWQFLGTPSVGDTLETVTFGDSNDIN 60
Query: 301 HFILGKHRIDRD 266
HFIL ++R++R+
Sbjct: 61 HFILFENRVNRN 72
Score = 44.0 bits (99), Expect = 0.003
Identities = 32/85 (37%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Frame = -3
Query: 254 MFSGPFHFVLDGTTVKLDFHNVXXXXXXXXXXXXSVGNDSYNTTVADHLLEXFXY*FASK 75
+F GP +FV DGTTV LDF V V DS N +V LL+ + F
Sbjct: 77 VFFGPVNFVGDGTTVDLDFSQVSFLLRQWSLLDLGVSQDSDNRSV---LLDSGQFSFNLF 133
Query: 74 LILPXLTG-FSESLLLAFVPVFVEA 3
+ T F E LL F+PV VE+
Sbjct: 134 GVSGVFTRVFGEGFLLGFIPVLVES 158
>UniRef50_Q2QAT1 Cluster: Ribosomal protein L3; n=1; uncultured
marine group II euryarchaeote HF70_59C08|Rep: Ribosomal
protein L3 - uncultured marine group II euryarchaeote
HF70_59C08
Length = 338
Score = 45.6 bits (103), Expect = 9e-04
Identities = 29/111 (26%), Positives = 45/111 (40%)
Frame = +2
Query: 230 QSEMGQRTLEXPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTKKLPRKXHKGLRKVA 409
Q + L + ++ VF ID I R+ K L K K R++
Sbjct: 177 QLDWAAEKLGEELGIEDVFESGSDIDVIGVTKGYGNQGVVRRFGVKLLSHKNSKRRRQIG 236
Query: 410 CIGAWHPSRVSFTVARAGQXGYHHRTXMNKKIYVLDKESTKRMAKLLXXMH 562
+G + V T+ +AGQ GYH RT NK+I + E ++ +H
Sbjct: 237 NMGDFGTGYVRKTIRQAGQTGYHQRTEYNKRILRIAGEEESQITPAGGFLH 287
>UniRef50_A1RWR0 Cluster: 50S ribosomal protein L3; n=1; Thermofilum
pendens Hrk 5|Rep: 50S ribosomal protein L3 -
Thermofilum pendens (strain Hrk 5)
Length = 334
Score = 44.4 bits (100), Expect = 0.002
Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 3/94 (3%)
Frame = +2
Query: 266 IPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTKKLPR--KXHKGLRKVACIGAWHPSRV 439
+ + VF + + ID I R+ +++PR K KG ++ +G P+ +
Sbjct: 182 LTISDVFKEGDYIDVIAVTKGKGFQGSVKRFGVEEMPRWHKHRKGHSRIGSVGPQKPA-I 240
Query: 440 SFTVARAGQXGYHHRTXMNKKIY-VLDKESTKRM 538
F GQ G+H RT NK+I V D ES K +
Sbjct: 241 MFYTPFPGQLGFHQRTEYNKRILKVGDAESLKEI 274
>UniRef50_UPI00015BB2A1 Cluster: LSU ribosomal protein L3P; n=1;
Ignicoccus hospitalis KIN4/I|Rep: LSU ribosomal protein
L3P - Ignicoccus hospitalis KIN4/I
Length = 358
Score = 44.0 bits (99), Expect = 0.003
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 2/91 (2%)
Frame = +2
Query: 266 IPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTKKLPR--KXHKGLRKVACIGAWHPSRV 439
+ V+ V + +D I R+ K+LP+ K KG R+V +W
Sbjct: 208 VDVEEVIEAGKFVDVIGVTKGKGFQGVIKRFGVKELPKWHKHRKGSRRVGA-RSWGKGTS 266
Query: 440 SFTVARAGQXGYHHRTXMNKKIYVLDKESTK 532
S+ V + GQ GYH RT NK++ ++ + +K
Sbjct: 267 SY-VPQPGQMGYHRRTDYNKRVLMISDDPSK 296
>UniRef50_A0RVX4 Cluster: 50S ribosomal protein L3; n=1; Cenarchaeum
symbiosum|Rep: 50S ribosomal protein L3 - Cenarchaeum
symbiosum
Length = 328
Score = 44.0 bits (99), Expect = 0.003
Identities = 20/51 (39%), Positives = 28/51 (54%)
Frame = +2
Query: 353 RWHTKKLPRKXHKGLRKVACIGAWHPSRVSFTVARAGQXGYHHRTXMNKKI 505
R K+ K K +R++ +G P V +TV RAGQ G+H R NK+I
Sbjct: 212 RMGAKRKQHKSRKTVRELGSLGPISPQNVMYTVPRAGQMGFHQRIEYNKRI 262
>UniRef50_A3DNA4 Cluster: 50S ribosomal protein L3; n=1;
Staphylothermus marinus F1|Rep: 50S ribosomal protein L3
- Staphylothermus marinus (strain ATCC 43588 / DSM 3639
/ F1)
Length = 395
Score = 43.6 bits (98), Expect = 0.004
Identities = 30/93 (32%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
Frame = +2
Query: 236 EMGQRTLEXPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTKKLPR--KXHKGLRKVA 409
+ ++ L + VD VF + + ID I R+ K+LPR K KG RK
Sbjct: 235 DYAEKLLGNYVTVDQVFREGQFIDIIGVTKGKGFQGVIKRFGVKELPRWHKHRKGSRK-- 292
Query: 410 CIGAWHPSRVSFT-VARAGQXGYHHRTXMNKKI 505
IG+ P + + + GQ G+H RT NK+I
Sbjct: 293 -IGSRSPGFGTMSETPQPGQMGFHRRTEYNKRI 324
Score = 32.7 bits (71), Expect = 6.7
Identities = 15/40 (37%), Positives = 26/40 (65%)
Frame = +3
Query: 132 VRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDKVKWARE 251
+RVIA T L +KK I+EI++ GGT+ +++ +A +
Sbjct: 200 IRVIASTIPVLSGIGKKKPEIIEIKIGGGTLSERIDYAEK 239
>UniRef50_Q9UXA8 Cluster: 50S ribosomal protein L3P; n=5;
Thermoprotei|Rep: 50S ribosomal protein L3P - Sulfolobus
solfataricus
Length = 351
Score = 41.1 bits (92), Expect = 0.019
Identities = 29/102 (28%), Positives = 44/102 (43%), Gaps = 2/102 (1%)
Frame = +2
Query: 224 RGQSEMGQRTLEXPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTKKLPR--KXHKGL 397
+ Q + L I + VF + ++ID + R+ +LPR K KG
Sbjct: 189 KSQLDYALNILGKEITIRDVFKEGQLIDVVGVTKGKGFAGVIKRYSVVELPRWHKHRKGS 248
Query: 398 RKVACIGAWHPSRVSFTVARAGQXGYHHRTXMNKKIYVLDKE 523
RK+ G S+T + GQ G+H RT NK+I + E
Sbjct: 249 RKIGTRGP-SLGTPSYT-PQPGQLGFHRRTEYNKRIIKIGDE 288
>UniRef50_Q99N25 Cluster: Ribosomal protein L3; n=2; Theria|Rep:
Ribosomal protein L3 - Mus musculus (Mouse)
Length = 67
Score = 32.7 bits (71), Expect = 6.7
Identities = 14/19 (73%), Positives = 17/19 (89%)
Frame = +1
Query: 538 GKVIXXNASTEYDLSEKSI 594
GK+I NAST+YDLS+KSI
Sbjct: 1 GKLIKNNASTDYDLSDKSI 19
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 547,950,406
Number of Sequences: 1657284
Number of extensions: 9644809
Number of successful extensions: 18127
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 17764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18123
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 41902926763
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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