Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30360
(598 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch... 106 2e-24
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz... 106 2e-24
SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation co... 27 1.6
SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase s... 27 2.1
SPBC1683.12 |||nicotinic acid plasma membrane transporter |Schiz... 26 3.6
SPAC31G5.14 |gcv1|n313|glycine decarboxylase T subunit|Schizosac... 25 6.3
SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb... 25 8.4
SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha... 25 8.4
>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
L3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 106 bits (255), Expect = 2e-24
Identities = 48/91 (52%), Positives = 58/91 (63%)
Frame = +2
Query: 236 EMGQRTLEXPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTKKLPRKXHKGLRKVACI 415
E + E + + S F Q+EMID I +RW TK+LPRK H+GLRKVACI
Sbjct: 193 EWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKRLPRKTHRGLRKVACI 252
Query: 416 GAWHPSRVSFTVARAGQXGYHHRTXMNKKIY 508
GAWHP+ V +TVARAG GY HRT +N KIY
Sbjct: 253 GAWHPANVQWTVARAGNAGYMHRTQLNSKIY 283
Score = 87.8 bits (208), Expect = 1e-18
Identities = 39/85 (45%), Positives = 57/85 (67%)
Frame = +3
Query: 3 RFYKNWYXXXXXXXXXXXXXWQDELGRKSIXKXFKKMIRYCSVVRVIAHTQMKLLKQRQK 182
RFYKNW+ + + +SI + +++ +YCSVVRV+AHTQ++ QK
Sbjct: 117 RFYKNWFKSKKKAFTKYAKKYAEST--QSINRELERIKKYCSVVRVLAHTQIRKTPLAQK 174
Query: 183 KAHIMEIQLNGGTIEDKVKWAREHW 257
KAH+MEIQ+NGG++ DKV+WAREH+
Sbjct: 175 KAHLMEIQVNGGSVADKVEWAREHF 199
>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 106 bits (255), Expect = 2e-24
Identities = 48/91 (52%), Positives = 58/91 (63%)
Frame = +2
Query: 236 EMGQRTLEXPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTKKLPRKXHKGLRKVACI 415
E + E + + S F Q+EMID I +RW TK+LPRK H+GLRKVACI
Sbjct: 193 EWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKRLPRKTHRGLRKVACI 252
Query: 416 GAWHPSRVSFTVARAGQXGYHHRTXMNKKIY 508
GAWHP+ V +TVARAG GY HRT +N KIY
Sbjct: 253 GAWHPANVQWTVARAGNAGYMHRTQLNSKIY 283
Score = 87.8 bits (208), Expect = 1e-18
Identities = 39/85 (45%), Positives = 57/85 (67%)
Frame = +3
Query: 3 RFYKNWYXXXXXXXXXXXXXWQDELGRKSIXKXFKKMIRYCSVVRVIAHTQMKLLKQRQK 182
RFYKNW+ + + +SI + +++ +YCSVVRV+AHTQ++ QK
Sbjct: 117 RFYKNWFKSKKKAFTKYAKKYAEST--QSINRELERIKKYCSVVRVLAHTQIRKTPLAQK 174
Query: 183 KAHIMEIQLNGGTIEDKVKWAREHW 257
KAH+MEIQ+NGG++ DKV+WAREH+
Sbjct: 175 KAHLMEIQVNGGSVADKVEWAREHF 199
>SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation
complex subunit Cdc45|Schizosaccharomyces pombe|chr
1|||Manual
Length = 638
Score = 27.5 bits (58), Expect = 1.6
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = +2
Query: 479 HRTXMNKKIYVLDKESTKRMAKLLXXMHLLSMTCLRNPLH 598
H + ++++ +E KR+ KLL M L + C + +H
Sbjct: 329 HSAYVGSRLHIWSEEGRKRLHKLLAKMGLSLVECKQTYIH 368
>SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase
subunit Dps1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 378
Score = 27.1 bits (57), Expect = 2.1
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 222 IEDKVKWAREHWRXLSLSILCLP 290
IE + WA+E+ + S+LCLP
Sbjct: 336 IEQTITWAKEYIKKAKDSLLCLP 358
>SPBC1683.12 |||nicotinic acid plasma membrane transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 26.2 bits (55), Expect = 3.6
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +3
Query: 123 CSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDK 233
C+VV + T M+ QRQ K I + LNG +++K
Sbjct: 433 CTVVGTLTATAMRFYLQRQNK--IKQEILNGERVDEK 467
>SPAC31G5.14 |gcv1|n313|glycine decarboxylase T
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 387
Score = 25.4 bits (53), Expect = 6.3
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +3
Query: 195 MEIQLNGGTIEDKVKWAREH 254
M +Q G TI KW REH
Sbjct: 46 MPVQYKGQTISASHKWTREH 65
>SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 25.0 bits (52), Expect = 8.4
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = -1
Query: 283 HRIDRDRX-LQCSLAHFTLSSMVPPLSW 203
H ID D + SL+H T SS++ L+W
Sbjct: 426 HNIDSDEDAVNESLSHSTKSSIIQSLAW 453
>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 697
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +3
Query: 228 DKVKWAREHWRXLSLSILCLPK 293
D + W W+ +SLS L LPK
Sbjct: 626 DTILWPECRWQKVSLSELVLPK 647
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,299,083
Number of Sequences: 5004
Number of extensions: 41265
Number of successful extensions: 86
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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